View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12744_low_1 (Length: 323)
Name: NF12744_low_1
Description: NF12744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12744_low_1 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 38 - 277
Target Start/End: Original strand, 1745 - 1984
Alignment:
| Q |
38 |
tgaaattcaaatagattcacataatatgaatttcaacctataaaagagtgtgggtgaaaaattaaaatagggttgttgctaaacaaaatccatactccaa |
137 |
Q |
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| T |
1745 |
tgaaattcaaatagattcacataatatgaatttcaacctataaaagagtgtgggtgaaaaattaaaatagggttgttgctaaacaaaatccatactccaa |
1844 |
T |
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| Q |
138 |
ttaactatggtcaaaagttaaaacacttttagcaagtaacaccctaaaaggctaaaacagttcatgtgacagttatgttagttttctttcactccaagaa |
237 |
Q |
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| T |
1845 |
ttaactatggtcaaaagttaaaacacttttagcaagtaacaccctaaaaggctaaaacagttcatgtgacagttatgttagttttctttcactccaagaa |
1944 |
T |
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| Q |
238 |
actcttttaccgtcatcttcacttgcaactgcaactgcaa |
277 |
Q |
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| T |
1945 |
actcttttaccgtcatcttcacttgcaactgcaactgcaa |
1984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 38 - 277
Target Start/End: Original strand, 3450964 - 3451203
Alignment:
| Q |
38 |
tgaaattcaaatagattcacataatatgaatttcaacctataaaagagtgtgggtgaaaaattaaaatagggttgttgctaaacaaaatccatactccaa |
137 |
Q |
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| T |
3450964 |
tgaaattcaaatagattcacataatatgaatttcaacctataaaagagtgtgggtgaaaaattaaaatagggttgttgctaaacaaaatccatactccaa |
3451063 |
T |
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| Q |
138 |
ttaactatggtcaaaagttaaaacacttttagcaagtaacaccctaaaaggctaaaacagttcatgtgacagttatgttagttttctttcactccaagaa |
237 |
Q |
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| T |
3451064 |
ttaactatggtcaaaagttaaaacacttttagcaagtaacaccctaaaaggctaaaacagttcatgtgacagttatgttagttttctttcactccaagaa |
3451163 |
T |
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| Q |
238 |
actcttttaccgtcatcttcacttgcaactgcaactgcaa |
277 |
Q |
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| T |
3451164 |
actcttttaccgtcatcttcacttgcaactgcaactgcaa |
3451203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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