View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12744_low_2 (Length: 317)
Name: NF12744_low_2
Description: NF12744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12744_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 62 - 304
Target Start/End: Complemental strand, 15556978 - 15556746
Alignment:
| Q |
62 |
tttaaattttcaagccattcctatcccattttaacccatacaagttttcaagttacattacatctatcttccaacctcaataacattcatatgttcctgt |
161 |
Q |
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| T |
15556978 |
tttaaattttcaagccattcctatcccattttaacccatacaagttttcaagttacattacatctatcttccaacctcaataacattcatatgttcctgt |
15556879 |
T |
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| Q |
162 |
acttttgcttttcagatcacattttctaccatgtcaccatatacactatcataattgatcacttaagagcaatctttattatacaatccattgnnnnnnn |
261 |
Q |
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| T |
15556878 |
acttttgc-tttcagatcccattttctcccatgtcaccatatacagtatcataattgatcactaaagagcaatctttattatacaatccattg------- |
15556787 |
T |
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| Q |
262 |
ncaaataaatcaataaaagtggacatcaataactgttacctat |
304 |
Q |
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| T |
15556786 |
--aaaaaaataaataaaagtggacatcaataactgttacctat |
15556746 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 46506265 - 46506325
Alignment:
| Q |
16 |
cagaggtatgtttcaaaataagttctagaatcttttccctgtttgctttaaattttcaagc |
76 |
Q |
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| T |
46506265 |
cagaggcatgtttcaaagtaagttctacaatgttttccctctttgcttataattttcaagc |
46506325 |
T |
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