View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12744_low_3 (Length: 317)

Name: NF12744_low_3
Description: NF12744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12744_low_3
NF12744_low_3
[»] chr2 (1 HSPs)
chr2 (19-309)||(28207013-28207303)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 28207303 - 28207013
Alignment:
Q  19 ctgattcccatggtatttcaatcaaattgtttggatcatcataaaaccctagagaagccaattcttgttctaaattattgttgtcaacaatttggcttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28207303 ctgattcccatggtatttcaatcaaattgtttggatcatcataaaaccctagagaagccaattcttgttctaaattattgttgtcaacaatttggcttga 28207204  T
Q  119 gttcaagattgtattagactcaattgaagatgataatgaatttgatgatgacccttttggatcctcattgattataacaagttcattgtttgatacttgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28207203 gttcaagattgtattagactcaattgaagatgataatgaatttgatgatgacccttttggatcctcattgattataacaagttcattgttggatacttgt 28207104  T
Q  219 ttttcagaatctttcattggtacctcatttgataaaaatgattctgatgaagagggtgaggttattgatgattctaacttagattcatctc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28207103 ttttcagaatctttcattggtacctcatttgataaaaatgattctgatgaagagggtgaggttattgatgattctaacttagattcatctc 28207013  T

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