View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12744_low_4 (Length: 255)
Name: NF12744_low_4
Description: NF12744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12744_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 47694883 - 47695119
Alignment:
| Q |
1 |
aagtaaacgcaattggaatttgtagaggagatattgaaccagaggattgccgtggtttcctaaaagcatcgacaacacttctcttgaacgatgtggaata |
100 |
Q |
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| T |
47694883 |
aagtaaacgcaattggaatttgtagaggagatattgaaccagaggattgccgtggtttcctaaaagcatccacaacacttctcttgaatgatgtggaata |
47694982 |
T |
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| Q |
101 |
caaaaaggagcaatcagttattacgactaatgcatcttacgctattccattgaatccatttttgatgtgatgacaacagaaacaagtaaatatcgaagcc |
200 |
Q |
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| T |
47694983 |
caaaaaggagcaatcagttactacgactagttcatcttacgctattccattgaatccatttttgatgtgatgacaacataaacaagtaaatatcgaagcc |
47695082 |
T |
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| Q |
201 |
aggttagtggctgtcgctgatgatgtgtttaataaaa |
237 |
Q |
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| T |
47695083 |
aggttagtggttgtcgctgatgatgtgtttaataaaa |
47695119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 47692426 - 47692525
Alignment:
| Q |
3 |
gtaaacgcaattggaatttgtagaggagatattgaaccagaggattgccgtggtttcctaaaagcatcgacaacacttctct-tgaacgatgtggaatac |
101 |
Q |
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| T |
47692426 |
gtaaatgcaattggaatctgtagaggagacattgaaccagaggactgtcgtggttgcctggaagcattcacaacacttctctcggaacgatgtggaatac |
47692525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 47673793 - 47673907
Alignment:
| Q |
1 |
aagtaaacgcaattggaatttgtagaggagatattgaaccagaggattgccgtggtttcctaaaagcatcgacaacacttctc-ttgaacgatgtggaat |
99 |
Q |
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| T |
47673793 |
aagtaaatgcaattggtttttgtagaggagacattaatccagaggaatgtcgcggttgtttgaaatcatcggctacacttctcgtggatcgatgtggaat |
47673892 |
T |
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| Q |
100 |
acaaaaaggagcaat |
114 |
Q |
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|||||||| |||||| |
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| T |
47673893 |
acaaaaagaagcaat |
47673907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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