View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12745_low_1 (Length: 518)
Name: NF12745_low_1
Description: NF12745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12745_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 39 - 501
Target Start/End: Complemental strand, 42536541 - 42536076
Alignment:
| Q |
39 |
ggagtggttgaacataattccataattttgtttcctgtcaacatttaacaatccgctcgcatctnnnnnnntgtgtgctatgaatcaacatttctattac |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
42536541 |
ggagtggttgaacataattccataattttgtttcctgtcaacatttaacaatccgctcgcatctaaaaaaatgtgtgctatgaatcaacatttctatcac |
42536442 |
T |
|
| Q |
139 |
acatgacacaaattaaagagcattgaattcctcgaatacatatgttaaaacgcg---gtaacatctacattttatcccagtttccagtagcctgaactgg |
235 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42536441 |
acatgacacaaatcaaagagcattgaattcctcgaatacatatgttaaaacgcgtcggtaacatctacattttatcccagtttccagtagcctgaactgg |
42536342 |
T |
|
| Q |
236 |
ttttgtaggcatcactggatccatacaaaactatagtaagcagatttcacgttgtaaataacatcgacagtgtaaaagcgatatgatcagtactgtctcg |
335 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42536341 |
ttttgtaggcatcactggatccacacaaaactatagtaagcagatttcatgttgtaaataacatcgacagtgtaaacgcgatatgatcagtactgtctcg |
42536242 |
T |
|
| Q |
336 |
cgattgtaggggaattttcaaaatagttgtggcgtcttccatgttaaaaatgtcgacaactagatagtgatgcaagtatttgagtttggatcaaatagtt |
435 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42536241 |
cgattgtaggggaattttcaaaatagttgtggcatcttccatgttaaaaatgtcgacaactagatagtgatgcaagtatttgagtttggatcaaatagtt |
42536142 |
T |
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| Q |
436 |
gagcaactgtcaggccttgcaagtctgcataaggtggagtagttggcttaacatcgagcaactgtc |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42536141 |
gagcaactgtcaggccttgcaagtctgcataaggtggagtagttgccttaacatcgagcaactgtc |
42536076 |
T |
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