View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12745_low_3 (Length: 301)
Name: NF12745_low_3
Description: NF12745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12745_low_3 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 48589563 - 48589391
Alignment:
| Q |
12 |
agagaaatagaagagaaagaagtgtagattagttatgaaaataccaaaatatccctgaatttggaaagcatatgcattgaattgtattcattaattcatt |
111 |
Q |
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| T |
48589563 |
agagaaatagaagagtaagaagtgtagattagttatgaaaataccaaaatatccctgaatttggaaagcatatgcattgaattgttttcattaattcatt |
48589464 |
T |
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| Q |
112 |
aatattaattcaaattgttact-annnnnnnnnacgaatgaaattagtagtagtatttaaaataaatagatct |
183 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
48589463 |
aatattaattcaaattgttactgatttttttttacgaatgaaattagtagtagtatttaaaataaatagatct |
48589391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 22753731 - 22753612
Alignment:
| Q |
12 |
agagaaatagaagagaaagaagtgtagattagttatgaaaataccaaaatatccctgaatttggaaagcatatgc-----attgaattgtattcattaat |
106 |
Q |
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|||||||||||||||||| |||| | |||||||||||||| ||||||||||||| ||| |||||| |||| ||| |||| ||||| || ||||| |
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| T |
22753731 |
agagaaatagaagagaaataagtcttgattagttatgaaagtaccaaaatatccttgatattggaatgcatctgccaaaaattggattgtgtttgttaat |
22753632 |
T |
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| Q |
107 |
tcattaatattaattcaaat |
126 |
Q |
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| T |
22753631 |
ttgttaatattaattcaaat |
22753612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 16871506 - 16871444
Alignment:
| Q |
12 |
agagaaatagaagagaaagaagtgtagattagttatgaaaataccaaaatatccctgaatttg |
74 |
Q |
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| T |
16871506 |
agagaaatagaagagaaagaagtgttaattatatataaaagtaccaaaatatccctaaatttg |
16871444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 22753587 - 22753553
Alignment:
| Q |
147 |
aatgaaattagtagtagtatttaaaataaatagat |
181 |
Q |
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| T |
22753587 |
aatgaaattagtagtagtatttaaagtaaatagat |
22753553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 37472328 - 37472383
Alignment:
| Q |
12 |
agagaaatagaagagaaagaagtgtagattagttatgaaaataccaaaatatccct |
67 |
Q |
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||||||||||||||||||||||||| ||||| |||| |||||||||| ||| |||| |
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| T |
37472328 |
agagaaatagaagagaaagaagtgttgattatttataaaaataccaagatacccct |
37472383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 175
Target Start/End: Original strand, 30770984 - 30771015
Alignment:
| Q |
144 |
acgaatgaaattagtagtagtatttaaaataa |
175 |
Q |
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| T |
30770984 |
acgaatgaaattagtagtagtatttaaaataa |
30771015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 42596400 - 42596461
Alignment:
| Q |
13 |
gagaaatagaagagaaagaagtgtagattagttatgaaaataccaaaatatccctgaatttg |
74 |
Q |
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| T |
42596400 |
gagaaatagaagagaaagaagtgttaattatatataaaagtaccaaaatatccctaaatttg |
42596461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 46635 - 46681
Alignment:
| Q |
12 |
agagaaatagaagagaaagaagtgtagattagttatgaaaataccaa |
58 |
Q |
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| T |
46635 |
agagaaatagaagagaaagaagtgttgattatttataaaagtaccaa |
46681 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 5045535 - 5045581
Alignment:
| Q |
12 |
agagaaatagaagagaaagaagtgtagattagttatgaaaataccaa |
58 |
Q |
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| T |
5045535 |
agagaaatagaagagaaagaagtgttgattatttataaaagtaccaa |
5045581 |
T |
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