View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12746_high_1 (Length: 383)

Name: NF12746_high_1
Description: NF12746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12746_high_1
NF12746_high_1
[»] chr6 (2 HSPs)
chr6 (144-383)||(21116626-21116867)
chr6 (175-205)||(21116930-21116960)
[»] chr1 (3 HSPs)
chr1 (16-383)||(12911980-12912367)
chr1 (3-208)||(12920797-12921018)
chr1 (60-383)||(12901815-12902148)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 144 - 383
Target Start/End: Complemental strand, 21116867 - 21116626
Alignment:
Q  144 acatgattttg--catcaatcatctcaaacaaacaagtgtctccaatcttcacattgcattctctcacaaattctgaccaacctttagtgaaccacccat 241  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21116867 acatgattttgaacatcaatcaactcaaacaaacaagtgtctccaatcttcacattgcattctctcacaaattctggccaacctttagtgaaccacccat 21116768  T
Q  242 aatcaaggtattgattataactcacctctacaaaccatgttccttcccctactttcaactccactgaatctccactaaatatattatgcctcttcaacag 341  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21116767 aatcgaggtattgattataactcacctctacaaaccaagttccttcccctactttcaactccactgaatctccactaaatatattatgcctcttcaacag 21116668  T
Q  342 acttggcagtacaaccagctgcatatacaagaacaaaataaa 383  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  21116667 acttggcagtacaatcagctgcatatacaagaacaaattaaa 21116626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 21116960 - 21116930
Alignment:
Q  175 caagtgtctccaatcttcacattgcattctc 205  Q
    |||||||||||||||||||||||||||||||    
T  21116960 caagtgtctccaatcttcacattgcattctc 21116930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 12912367 - 12911980
Alignment:
Q  16 gaacctatgtttcatttaaaccaacgggaagaacacagttg----------------tcgcaattagagaatatttacattttccgtaacaccccttaaa 99  Q
    |||||| ||||||||||||||||||||||||||||||||||                ||| |||||||||||||||||||||| ||||||||||||||||    
T  12912367 gaacctttgtttcatttaaaccaacgggaagaacacagttgcaaaataaaccgagtctcgtaattagagaatatttacattttacgtaacaccccttaaa 12912268  T
Q  100 atgacctaacaaacaaggtgtgtcaaacaattgaaaccttgaacacatgattttg--catcaatcatctcaaacaaacaagtgtctccaatcttcacatt 197  Q
    |||||  ||||| ||| |||| |||||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||| |||||| |||| || ||    
T  12912267 atgacaaaacaagcaa-gtgtctcaaacaattgaaaccttgaacacatgattttgcacatcaatcgtctcaaacaagcaagtatctccagtctttacttt 12912169  T
Q  198 gcattctctcacaaattctgaccaacctttagtgaaccacccataatcaaggtattgattataactcacctctacaaaccatgttccttcccctactttc 297  Q
    ||| |||||||||||||||  |||||||||||||||||| ||||  || || | || |||||||||||| ||||||||||||||||||||||||||| ||    
T  12912168 gcaatctctcacaaattcttgccaacctttagtgaaccaaccatggtcgagatgttcattataactcacatctacaaaccatgttccttcccctactctc 12912069  T
Q  298 aactccactgaatctccactaaatatattatgcctcttcaacag---acttggcagtacaaccagctgcatatacaagaacaaaataaa 383  Q
    ||||||||||||| |||||||||||||  |||| ||||||||||   |||||| |||||||||| ||||||||| | ||||||| ||||    
T  12912068 aactccactgaatttccactaaatataccatgcttcttcaacagctcacttggtagtacaaccaactgcatatatatgaacaaattaaa 12911980  T

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Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 12921018 - 12920797
Alignment:
Q  3 ccattttcatgccgaacctatgtttcatttaaaccaacgggaagaacacagttg----------------tcgcaattagagaatatttacattttccgt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||    
T  12921018 ccattttcatgccgaacctatgtttcatttaaaccaacgggaagaacacagttgcaaaataaaatgagtctcgcaattagagaatatttacattttccgt 12920919  T
Q  87 aacaccccttaaaatgacctaacaaacaaggtgtgtcaaacaattgaaaccttgaacacatgattttgcatcaatcatctcaaacaaacaagtgtctcca 186  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12920918 aacaccccttaaaatgacataacaagcaaggtgtctcaaacaattgaaaccttgaacacatgattttgcatcaatcatctcaaacaaacaagtgtctcca 12920819  T
Q  187 atcttcacattgcattctctca 208  Q
    ||||||||||||||||||||||    
T  12920818 atcttcacattgcattctctca 12920797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 60 - 383
Target Start/End: Original strand, 12901815 - 12902148
Alignment:
Q  60 caattagagaatatttacattttccgtaacaccccttaaaatgacctaaca--aacaag---gtgtgtcaaacaattgaaaccttgaacacatgattttg 154  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||  ||||  ||||||   |||| |||||||||||||||||||||||||| ||||||    
T  12901815 caattagagaagatttacattttatgtaacaccccttaaaatgacaaaacacaaacaagcaagtgtctcaaacaattgaaaccttgaacacattattttg 12901914  T
Q  155 c--atcaatcatctcaaacaaacaagtgtctccaatcttcacattgcattctctcacaaattctgaccaacctttagtgaaccacccataatcaaggtat 252  Q
    |  |||||||||||||||||| ||||||||| |  |||| || |||||||||||||||||||||  ||| |||||||||||||||||||| || || | |    
T  12901915 cgcatcaatcatctcaaacaagcaagtgtcttcggtctttactttgcattctctcacaaattcttgccagcctttagtgaaccacccatagtcgagatgt 12902014  T
Q  253 tgattataactcacctctacaaaccatgttccttcccctactttcaactccactgaatctccactaaatatattatgcctcttcaacag---acttggca 349  Q
    | ||  ||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||| || || |||||   |||||| |    
T  12902015 tcatcctaactcacctctacaaaccatgttccttcccctaacttcaactccaccgaatttccactaaatatattatgtctttttaacagctcacttggta 12902114  T
Q  350 gtacaaccagctgcatatacaagaacaaaataaa 383  Q
    ||||||||| ||||||||| ||||||||| ||||    
T  12902115 gtacaaccaactgcatatataagaacaaattaaa 12902148  T

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