View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12746_high_3 (Length: 231)
Name: NF12746_high_3
Description: NF12746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12746_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 25380767 - 25380584
Alignment:
| Q |
11 |
gagcacagacaagtaactgaagagtttaacctgatgaacgactattaatagcatcagttattcgtaaaggatgatgttggtcttcattcttgaacttcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25380767 |
gagcacagacaagtaactgaagagtttaacctgatgaatgactgttaatagcatcagttattcgtaaaggatgatgttggtcttcattcttgaacttcag |
25380668 |
T |
|
| Q |
111 |
cttaatttgatgtcttgttttactagcaaaaatttgttgaatcattgtaaaatctaggccaaactccttcagagcctatgtttt |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25380667 |
cttaatttgacgtcttgttttactagcaaaaatttgttgaatcattgtaaaatctaggccaaactccttcagagcctatgtttt |
25380584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 38331968 - 38332095
Alignment:
| Q |
48 |
acgactattaatagcatcagttattcgtaaaggatgatgttggtcttcattcttgaacttcagcttaatttgatgtcttgttttactagcaaaaatttgt |
147 |
Q |
| |
|
|||| |||| || |||||||||| |||||||||| ||| | ||||| |||||| |||||| |||||||||||| | ||||||| || |||| ||| |
|
|
| T |
38331968 |
acgattattcatggcatcagttaacagtaaaggatgttgtcgctcttccttcttgtacttcaacttaatttgatgacgtgttttatcagggaaaagctgt |
38332067 |
T |
|
| Q |
148 |
tgaatcattgtaaaatctaggccaaact |
175 |
Q |
| |
|
|| ||||| ||||||||| |||||||| |
|
|
| T |
38332068 |
tgtatcatagtaaaatctgtgccaaact |
38332095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University