View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12746_low_2 (Length: 364)
Name: NF12746_low_2
Description: NF12746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12746_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 36207191 - 36206856
Alignment:
| Q |
14 |
ttcactgggaaggttctggttattgtgatttatactattttgggtttctattggtcagttctgttctatggctccacctatttgtacttgatcgtttctc |
113 |
Q |
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| T |
36207191 |
ttcactgggaaggttctggttattgtgatttatactattttgggtttctattggtcagttctgttctatggctccacctatttgtacttgatcgtttctc |
36207092 |
T |
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| Q |
114 |
tcctagagtcccttcaatatagtcagcaacacgcccaaaatgaaaagaacaatgataagacagtcactcatgctacaacatcaccaatggttatgcacga |
213 |
Q |
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| T |
36207091 |
tcctagagtcccttcaatatagtcagcaacacgcccaaaatgaaaagaacaatgataagacagtcactcatgctacaacatcaccaatggttatgcacga |
36206992 |
T |
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| Q |
214 |
agccacataacatctactagctaggaacaacactcaagctaaaacacttactgcccaaactatgcttacaggtcccaaggagcacaagaagctttggagg |
313 |
Q |
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| T |
36206991 |
agccacataacatctactagctaggaacaacactcaagctaaaacacttactgcccaaactatgcttacaggtcccaaggagcacaagaagctttggagg |
36206892 |
T |
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| Q |
314 |
accaaagtcttgagctacataactcgtttgatattt |
349 |
Q |
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| T |
36206891 |
accaaagtcttgagctacataactcgtttgatattt |
36206856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 400621 - 400572
Alignment:
| Q |
178 |
cactcatgctacaacatcaccaatggttatgcacgaagccacataacatc |
227 |
Q |
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| T |
400621 |
cactcctgctccaacatcaccaatggttatgtaagaagccacacaacatc |
400572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 10989228 - 10989369
Alignment:
| Q |
143 |
cacgcccaaaatgaaaagaacaatgataagacagtcactcatgctacaacatcaccaatggttatgcacgaagccacataacatctactagctaggaaca |
242 |
Q |
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| T |
10989228 |
cacgcccaaactgaaaagaacaatgataaggtagtcacttatgctacaacatctcaaatggatacgcaagaagccacacaacatctgataccaaggaaca |
10989327 |
T |
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| Q |
243 |
acactcaagctaaaacacttactgcccaaactatgcttacag |
284 |
Q |
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| T |
10989328 |
acaatcaagccaaaacacatactgcccaaactatgattacag |
10989369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 10989405 - 10989456
Alignment:
| Q |
298 |
caagaagctttggaggaccaaagtcttgagctacataactcgtttgatattt |
349 |
Q |
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| T |
10989405 |
caagaagctttggaggatcaaagtcttgagcttcataactcgtttgatattt |
10989456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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