View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12746_low_4 (Length: 251)
Name: NF12746_low_4
Description: NF12746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12746_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 1459704 - 1459492
Alignment:
| Q |
18 |
atatgatatatcctatgtctctcttgtcttttccaacgcatgccgcaaaaccttaacaaagttgaatagagcagatattattcaatgtgattgcggggtt |
117 |
Q |
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| T |
1459704 |
atatgatatatcctatgtctctcttctcttttccaacgcatgccgcaaaaccttaacaaagttgaatagagcagatattattcaatgtgattgcggggtt |
1459605 |
T |
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| Q |
118 |
ccgatggaagcacttttaaatgtggagtttctacacataaaactatccaaggtatatatcatgatatgatgcatgccattgaaaattaatattgtcaatt |
217 |
Q |
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| T |
1459604 |
cggatgaaagcactttcaaatgtggagtttctacacataaaactatccaaggtatatatcatgatatgatgcatgccattgaaaattaatattgtcaatt |
1459505 |
T |
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| Q |
218 |
ttttgaaactgag |
230 |
Q |
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||||||||||||| |
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| T |
1459504 |
ttttgaaactgag |
1459492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 1446254 - 1446151
Alignment:
| Q |
65 |
aaaccttaacaaagttgaatagagcagatattattcaatgtgattgcggggttccgatggaagcacttttaaatgtggagtttctacacataaaactatc |
164 |
Q |
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| T |
1446254 |
aaaccttaacaaagttgattagagcagatattattgaatgtaattgcgatgttccgatgaaagcactttcaaatgtggagtttctacgcataaaactata |
1446155 |
T |
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| Q |
165 |
caag |
168 |
Q |
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|||| |
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| T |
1446154 |
caag |
1446151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 12104995 - 12105028
Alignment:
| Q |
65 |
aaaccttaacaaagttgaatagagcagatattat |
98 |
Q |
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| T |
12104995 |
aaaccttaacaaagttgaaaagagcagatattat |
12105028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 975064 - 974962
Alignment:
| Q |
70 |
ttaacaaagttgaatagagcagatattattcaatgtgattgcggggttccgatggaagcacttttaaatgtggagtttctacacataaaactatccaagg |
169 |
Q |
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|||| ||| ||||| ||||||||||||| | | ||||| ||| ||||| || || |||||| |||| |||||||||||| ||||||||||||| ||| |
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| T |
975064 |
ttaaaaaaattgaacagagcagatattactgactgtgaatgctattttccggtgaaatcactttcaaatttggagtttctacgcataaaactatccgagg |
974965 |
T |
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| Q |
170 |
tat |
172 |
Q |
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||| |
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| T |
974964 |
tat |
974962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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