View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12746_low_5 (Length: 233)
Name: NF12746_low_5
Description: NF12746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12746_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28871084 - 28870863
Alignment:
| Q |
1 |
acggcaagagctttagagcacatgttgcctataaaaatggcttagctatactataccattgaaaatgaaagaaagactaaaatttatcaaataatgttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28871084 |
acggcaagagctttagagcacatgttgcctataaaaatggcttagctatactataccattgaaaatgaaagaaagactaaaatttatcaaacaatgttca |
28870985 |
T |
|
| Q |
101 |
tatcccactccttgatcaacgggaaagacgactcaaaaaatttatgaacagacctgaagaacccaatgagcacagcttaagaatcttgctacgccaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28870984 |
tatcccactccttgatcaacgggaaagacgactcaaaaaatttatgaacagacctgaagaacccaatgagcacagcttaagaatcttgctacgccaagtg |
28870885 |
T |
|
| Q |
201 |
caaaaacataatgagcagtgaa |
222 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
28870884 |
caaaaacgtaatgagcagtgaa |
28870863 |
T |
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