View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12746_low_7 (Length: 201)
Name: NF12746_low_7
Description: NF12746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12746_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 43505554 - 43505383
Alignment:
| Q |
18 |
catatagtatgtgcaggctttggagataggagaattttgttggaagaaagaacaactcttatttgcaatagtagttgtggttatgttgaaatttttgttt |
117 |
Q |
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| T |
43505554 |
catatagtatgtgcaggctttggagataggagaattttgttggaagaaagaacaactcttatttgcaatagtagttgtggttatgttgaaatttttgttt |
43505455 |
T |
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| Q |
118 |
tccatcattattcactctaacattctaccagtgaatgttaatttatctttatttctttctctttctattcat |
189 |
Q |
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| T |
43505454 |
tccatcattattcactctaacattctaccactgaatgttaatttatctttatttctttttctttctattcat |
43505383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 39071263 - 39071093
Alignment:
| Q |
18 |
catatagtatgtgcaggctttggagataggagaattttgttggaagaaagaacaactcttatttgcaatagtagttgtggttatgttgaaatttttgttt |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39071263 |
catatagtatttgcaggctttggagataggagaattttgttggaagaaagaacaactcttatttgcaatagtagttgtggttatgttgaaatttttgttt |
39071164 |
T |
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| Q |
118 |
tccatcattattcactctaacattctaccagtgaatgttaatttatctttatttctttctctttctattcat |
189 |
Q |
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| T |
39071163 |
tccatcattattcactctaacattctaccaccgaatgttaatttatctctatttctttttc-ttctattcat |
39071093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 348259 - 348428
Alignment:
| Q |
18 |
catatagtatgtgcaggctttggagataggagaattttgttggaagaaagaacaactcttatttgcaatagtagttgtggttatgttgaaatttttgttt |
117 |
Q |
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| T |
348259 |
catatagtatgtgtaggttttggagataggagaattttgttg----aaagaacaactcttatttacaaaggtagttgtggttacattgaaattcttgttt |
348354 |
T |
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| Q |
118 |
tccatcattattcact--ctaacattctaccagtgaatgttaatttatctttatttctttctctttctattcat |
189 |
Q |
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||||||||||| | | |||| ||||||||| ||||| ||||||||| | |||||||| ||||||||||||| |
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| T |
348355 |
tccatcattatatatttactaatattctaccactgaatattaatttatttccatttctttttctttctattcat |
348428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 42124821 - 42124966
Alignment:
| Q |
18 |
catatagtatgtgcaggctttggagataggagaattttgttggaagaaagaacaactcttatttgcaatagtagttgtggttatgttgaaatttttgt-t |
116 |
Q |
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|||||||||| | | || |||||||| ||||||||||||||| |||||||||||||||||| ||| || |||||||||| ||||||||| ||| | |
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| T |
42124821 |
catatagtatatacgggttttggagacaggagaattttgttg----aaagaacaactcttatttacaaaggtggttgtggttacattgaaatttgtgtgt |
42124916 |
T |
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| Q |
117 |
ttccatcattattcactc-taacattctaccagtgaatgttaatttatct |
165 |
Q |
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|| |||| ||||| |||| ||||||||||||| |||||||||||||||| |
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| T |
42124917 |
tttcatcgttatttactcttaacattctaccacggaatgttaatttatct |
42124966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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