View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12747_high_1 (Length: 237)

Name: NF12747_high_1
Description: NF12747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12747_high_1
NF12747_high_1
[»] chr5 (1 HSPs)
chr5 (16-220)||(37975084-37975290)
[»] chr4 (2 HSPs)
chr4 (93-177)||(19121678-19121763)
chr4 (93-153)||(27843827-27843888)
[»] chr7 (2 HSPs)
chr7 (105-180)||(21255443-21255518)
chr7 (125-173)||(25592662-25592710)
[»] chr3 (1 HSPs)
chr3 (93-154)||(31294872-31294934)
[»] scaffold0370 (2 HSPs)
scaffold0370 (108-157)||(8913-8962)
scaffold0370 (108-157)||(14203-14252)
[»] chr2 (1 HSPs)
chr2 (93-168)||(8821706-8821781)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 37975290 - 37975084
Alignment:
Q  16 gtttttgggtttaaactacactaagaaatgcttacataaaacataaatgtaagcgataannnnnnnnnnnnnnnn--gcaaaataagcttgttgattgat 113  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||                  || ||||||||||||||||||||    
T  37975290 gtttttgggtttaaactacactaagaaatgcataaataaaacataaatgtaagcgataattttttttttttttttttgcgaaataagcttgttgattgat 37975191  T
Q  114 tgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaatattgcctatatgcttaaacctccattcagcta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37975190 tgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaatattgcctatatgcttaaacctccattcagcta 37975091  T
Q  214 atttcac 220  Q
    |||||||    
T  37975090 atttcac 37975084  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 19121678 - 19121763
Alignment:
Q  93 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaa 177  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| || |||||||||||||||||| ||||||  ||| ||||||||    
T  19121678 aaaataagcttgtttgattgattggatatgttaattacaatgtatgcacaaaatatttatagtgtcattatttcctattagccaaa 19121763  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 27843888 - 27843827
Alignment:
Q  93 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatag 153  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||| |||||| | |||||||||    
T  27843888 aaaataaacttgtttgattgattgaatgtgttaattacaatgtatgaacatagtatttatag 27843827  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 21255518 - 21255443
Alignment:
Q  105 ttgattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaa 180  Q
    |||||||||||| |  |||||||| ||||| |||| | |||||||||| ||||| ||||||||| ||| |||||||    
T  21255518 ttgattgattgagtgcgttaattacaatgtatgaatataatatttataatgtaactattgtctattagacaaacaa 21255443  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 25592710 - 25592662
Alignment:
Q  125 attagaatgtctgaacaaaatatttatagtgtaattattgtctagtagc 173  Q
    |||| ||||| |||||||| |||||||||||||| ||||||||| ||||    
T  25592710 attacaatgtatgaacaaagtatttatagtgtaactattgtctactagc 25592662  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 31294934 - 31294872
Alignment:
Q  93 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagt 154  Q
    |||||||||||||| ||||||||| || ||||| ||| ||||| |||| ||||||||||||||    
T  31294934 aaaataagcttgtttgattgattgtatgtgttatttaaaatgtatgaataaaatatttatagt 31294872  T

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Target: scaffold0370 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 8913 - 8962
Alignment:
Q  108 attgattgaatatgttaattagaatgtctgaacaaaatatttatagtgta 157  Q
    |||||||| || ||||||||| ||||| |||||||| |||||||||||||    
T  8913 attgattggatgtgttaattacaatgtatgaacaaactatttatagtgta 8962  T

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Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 14203 - 14252
Alignment:
Q  108 attgattgaatatgttaattagaatgtctgaacaaaatatttatagtgta 157  Q
    |||||||| || ||||||||| ||||| |||||||| |||||||||||||    
T  14203 attgattggatgtgttaattacaatgtatgaacaaactatttatagtgta 14252  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 8821706 - 8821781
Alignment:
Q  93 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtcta 168  Q
    |||||||||||||| ||||||||| || ||| ||||| ||| | | |||| |||||||||||||||| |||||||||    
T  8821706 aaaataagcttgtttgattgattggatgtgtaaattacaat-tatcaacataatatttatagtgtaactattgtcta 8821781  T

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