View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12748_high_1 (Length: 1110)
Name: NF12748_high_1
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_high_1 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0548 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 1023; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1023; E-Value: 0
Query Start/End: Original strand, 19 - 1110
Target Start/End: Complemental strand, 28715605 - 28714514
Alignment:
| Q |
19 |
caatcttctgtggattgcaacatgtcccagcaaagctttaggttaaaagcttcatttaacgaaatgagagatctcaatcccaaaccaccttccaagtaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
28715605 |
caatcttctgtggattgcaacatgtcccagcaaagctttaggttaaaagcttcatttaacgaaatgagagatctcaatcccaaaccaccctccaggtaag |
28715506 |
T |
|
| Q |
119 |
gtttgcagannnnnnnccatgcaactgtcacaagctttctttttgttgtatctccactccatataaaatttttaatccatttctcaatgtcctttaagag |
218 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28715505 |
gtttgcaaatttttttccatgcaactgtcacaagctttctttttgttgtatctccactccatataaaatttttaatccatttctcaatgtcctttaagag |
28715406 |
T |
|
| Q |
219 |
ggaaactggccaagaataaattgacattgaatgagtgagcatactatagataacagattttaccaactgcagccttccagctatagaaagcaaagaagcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28715405 |
ggaaactggccaagaataaattgacattgagtgagtgagcatactatagataacaaattttaccaactgcagccttccagctatagaaagcaaagaagcc |
28715306 |
T |
|
| Q |
319 |
ttccatgctgagagttttgatttgattttgtcagctatgggttgaagatgaattgcctttggcctacctttgaaaatgggaactccaaggtatatgaatg |
418 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28715305 |
ttccatgctgagagttttgattttattttgtcagctatgggttgaagatgaattgcctttggcctacctttgaaaatgggaactccaagatatatgaatg |
28715206 |
T |
|
| Q |
419 |
gtaatgaaccaatttcaaagcctaaaaggttaacaatattgttcagtctggcctgagagataccacctgcaaatatggtagattttcttgcactaataac |
518 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28715205 |
gtaatgaaccaattttaaagcctaaaaggttaacaatattgttcagtctggcctgagagataccacctgcaaatatggtagattttcttgcactaataac |
28715106 |
T |
|
| Q |
519 |
ctggccagcactattagcatacctagagaagagattgtgtaaagcttcaagacaatcaaaatttcctctgcaatatatcataatatcatccgcatataag |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28715105 |
ctggccagcactattagcatacctagagaagagattgtgtaaagcttcaagacaatcaaaatttcctctgcaatatatcataatatcatccgcatataag |
28715006 |
T |
|
| Q |
619 |
caatgtgaaggtatttggatattccttgcaccagtaattaacttgactttgccttcctccaccagctttgtgattcccctactcagtacttcttctgcca |
718 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28715005 |
caatgtgaaggtatttgaatatttcttgcaccagtaattaacttgactttgccttcctccaccagctttgtgattcccctacttagtacttcttctgcca |
28714906 |
T |
|
| Q |
719 |
aacaaaatagaagaggggacaatggatcgccttgtctaactccccttgtacacttaaaataaccctgttgtttgccattaattgagattgaaagagtggc |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28714905 |
aacaaaatagaagaggggacaatggatcgccctgtctaactccccttgtacacttaaaataaccctgttgtttgccattaattgagattgaaagagtggc |
28714806 |
T |
|
| Q |
819 |
tgaggataaaatggaagcaatccaattacagaaagtctgattgaagccaaaacaactgagcaccttcaagagaaacttccaatcaagagtgtcaaaagct |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28714805 |
tgaggataaaatggaagcaatccaattacagaaagtctgattgaagccaaaacaactgagcaccttcaagagaaacttccaatcaagagtgtcaaaagct |
28714706 |
T |
|
| Q |
919 |
tttgtgatatcaatcttgagagctaagttgccaccaaaagctttcttgtccagaatgttgattgcttcagaagcaagacaaagacaatccttaatatttc |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28714705 |
tttgtgatatcaatcttgagagctaagttgccaccaaaagctttcttgtccagaatgttgattgcttcagaagcaagacaaagacaatccttaatatttc |
28714606 |
T |
|
| Q |
1019 |
ttcctttaatgaaacctttttgattgcttgagataatagttggaagaatacttgcaagtctgtcagcaataatcttggaaataaccttgaat |
1110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28714605 |
ttcctttaatgaaacctttttgattgcttgagataatagttggaagaatacttgcaagtctgtcagcaataatcttggaaataaccttgaat |
28714514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 17629526 - 17629579
Alignment:
| Q |
316 |
gccttccatgctgagagttttgatttgattttgtcagctatgggttgaagatga |
369 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
17629526 |
gccttccaagcagatagttttgctttgattttgtcagctactggttgaagatga |
17629579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 1011; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1011; E-Value: 0
Query Start/End: Original strand, 19 - 1110
Target Start/End: Complemental strand, 16489237 - 16488146
Alignment:
| Q |
19 |
caatcttctgtggattgcaacatgtcccagcaaagctttaggttaaaagcttcatttaacgaaatgagagatctcaatcccaaaccaccttccaagtaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
16489237 |
caatcttctgtggattgcaacatgtcccagcaaagttttaggttaaaagcttcatttaacgaaatgagagatctcaatcccaaaccaccctctaggtaag |
16489138 |
T |
|
| Q |
119 |
gtttgcagannnnnnnccatgcaactgtcacaagctttctttttgttgtatctccactccatataaaatttttaatccatttctcaatgtcctttaagag |
218 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16489137 |
gtttgcatatttttttccatgcaactgtcacaagctttctttttgttgtatctccactccatataaaatttttaatccatttctcaatgtcctttaagag |
16489038 |
T |
|
| Q |
219 |
ggaaactggccaagaataaattgacattgaatgagtgagcatactatagataacagattttaccaactgcagccttccagctatagaaagcaaagaagcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16489037 |
ggaaactggccaagaataaattgacattgagtgagtgagcatactatagataacatattttaccaactgcagccttccagctatagaaagcaaagaagcc |
16488938 |
T |
|
| Q |
319 |
ttccatgctgagagttttgatttgattttgtcagctatgggttgaagatgaattgcctttggcctacctttgaaaatgggaactccaaggtatatgaatg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16488937 |
ttccatgctgagagttttgatttgattttgtcaactatgggttgaagatgaattgcctttggcctacctttgaaaatgggaactccaaggtatatgaatg |
16488838 |
T |
|
| Q |
419 |
gtaatgaaccaatttcaaagcctaaaaggttaacaatattgttcagtctggcctgagagataccacctgcaaatatggtagattttcttgcactaataac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16488837 |
gtaatgaaccaatttcaaagcctaaaaggttaacaatattgttcagtctggcctgagatataccacctgcaaatatggtagattttcttgcactaataac |
16488738 |
T |
|
| Q |
519 |
ctggccagcactattagcatacctagagaagagattgtgtaaagcttcaagacaatcaaaatttcctctgcaatatatcataatatcatccgcatataag |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16488737 |
ctggccagcactattagcatacctagagaagagattgtgtaaagcttcaagacaatcaaaatttcctctgcaatatatcataatatcatccgcatataag |
16488638 |
T |
|
| Q |
619 |
caatgtgaaggtatttggatattccttgcaccagtaattaacttgactttgccttcctccaccagctttgtgattcccctactcagtacttcttctgcca |
718 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16488637 |
caatgtgaaggtatttgaatatttcttgcaccagtaattaacttgactttgccttcctccaccagctttgtgattcccctacttagtacttcttctgcca |
16488538 |
T |
|
| Q |
719 |
aacaaaatagaagaggggacaatggatcgccttgtctaactccccttgtacacttaaaataaccctgttgtttgccattaattgagattgaaagagtggc |
818 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16488537 |
aacaaaatagaagaggggacattggatcgccctgtctaactccccttgtacacttaaaataaccctgttgtttgccattaattgagattgaaagagtggc |
16488438 |
T |
|
| Q |
819 |
tgaggataaaatggaagcaatccaattacagaaagtctgattgaagccaaaacaactgagcaccttcaagagaaacttccaatcaagagtgtcaaaagct |
918 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16488437 |
tgaggataaaatggaagcaatccaattacagaaagtctgattgaagccaaaacaattgagcaccttcaagagaaacttccaatcaagagtgtcaaaagct |
16488338 |
T |
|
| Q |
919 |
tttgtgatatcaatcttgagagctaagttgccaccaaaagctttcttgtccagaatgttgattgcttcagaagcaagacaaagacaatccttaatatttc |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16488337 |
tttgtgatatcaatcttgagagctaagttgccaccaaaagctttcttgtccagaatgttgattgcttcagaagcaagacaaagacaatccttaatatttc |
16488238 |
T |
|
| Q |
1019 |
ttcctttaatgaaacctttttgattgcttgagataatagttggaagaatacttgcaagtctgtcagcaataatcttggaaataaccttgaat |
1110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16488237 |
ttcctttaatgaaacctttttgattgcttgagataatagttggaagaatacttgcaagtctgtcagcaataatcttggaaataaccttgaat |
16488146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 766
Target Start/End: Original strand, 19133030 - 19133099
Alignment:
| Q |
697 |
ctactcagtacttcttctgccaaacaaaatagaagaggggacaatggatcgccttgtctaactccccttg |
766 |
Q |
| |
|
||||||| ||||| ||||| | |||||| |||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
19133030 |
ctactcaaaacttcctctgcaagacaaaaaagaagaggggacaaagggtccccttgtcttactccccttg |
19133099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 706 - 1068
Target Start/End: Original strand, 17830473 - 17830835
Alignment:
| Q |
706 |
acttcttctgccaaacaaaatagaagaggggacaatggatcgccttgtctaactccccttgtacacttaaaataaccctgttgtttgccattaattgaga |
805 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| |||||| |||||| || | ||| || || |||||||| || ||||||||||| | |
|
|
| T |
17830473 |
acttcttctgccaaacaaaaaagaagaggcgacaatggatcaccttgttgaactcctctagaacagttgaagtaaccctgctgcacaccattaattgaaa |
17830572 |
T |
|
| Q |
806 |
ttgaaagagtggctgaggataaaatggaagcaatccaattacagaaagtctgattgaagccaaaacaactgagcaccttcaagagaaacttccaatcaag |
905 |
Q |
| |
|
| ||||||| ||||| || || ||||| || |||| || |||||| ||||||| || |||||||||||||| || || | || || |||||| | |
|
|
| T |
17830573 |
tagaaagagatgctgaagacaagatggaggctatccgatgacagaatgtctgatcaaaaccaaaacaactgagaacttttagaaggaaaccccaatctaa |
17830672 |
T |
|
| Q |
906 |
agtgtcaaaagcttttgtgatatcaatcttgagagctaagttgccaccaaaagctttcttgtccagaatgttgattgcttcagaagcaagaca-aagaca |
1004 |
Q |
| |
|
||||||||||||||| ||||| || || || | |||||| || |||||| ||||||||||||||| | | | |||||| ||||||||||| ||| | |
|
|
| T |
17830673 |
agtgtcaaaagctttagtgatgtcgattttcaaagctaaattcccaccataagctttcttgtccaataaagtaactgcttctgaagcaagacacaagtc- |
17830771 |
T |
|
| Q |
1005 |
atccttaatatttcttcctttaatgaaacctttttgattgcttgagataatagttggaagaata |
1068 |
Q |
| |
|
|| || |||||||| ||||| ||||| |||||||||||| || ||||||| |||||||||| |
|
|
| T |
17830772 |
gtctttgatatttctacctttgatgaaccctttttgattgtcagatataatagatggaagaata |
17830835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 5994 - 5952
Alignment:
| Q |
167 |
tatctccactccatataaaatttttaatccatttctcaatgtc |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
5994 |
tatctccactccagataaaatttttaatccatttttcaatgtc |
5952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 350
Target Start/End: Original strand, 561 - 592
Alignment:
| Q |
319 |
ttccatgctgagagttttgatttgattttgtc |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
561 |
ttccatgctgagagttttgatttgattttgtc |
592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 898 - 957
Target Start/End: Original strand, 9229115 - 9229174
Alignment:
| Q |
898 |
caatcaagagtgtcaaaagcttttgtgatatcaatcttgagagctaagttgccaccaaaa |
957 |
Q |
| |
|
||||||||||| ||||| |||| | ||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
9229115 |
caatcaagagtatcaaatgcttctctgatatcaaccttgagagccaagttcccaccaaaa |
9229174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 766
Target Start/End: Original strand, 833 - 902
Alignment:
| Q |
697 |
ctactcagtacttcttctgccaaacaaaatagaagaggggacaatggatcgccttgtctaactccccttg |
766 |
Q |
| |
|
||||||| ||||| ||||| | |||||| |||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
833 |
ctactcaaaacttcctctgcaagacaaaaaagaagaggggacaaagggtccccttgtcttactccccttg |
902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 30220363 - 30220310
Alignment:
| Q |
316 |
gccttccatgctgagagttttgatttgattttgtcagctatgggttgaagatga |
369 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
30220363 |
gccttccaagcagatagttttgctttgattttgtcagctactggttgaagatga |
30220310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 766
Target Start/End: Original strand, 15088944 - 15089013
Alignment:
| Q |
697 |
ctactcagtacttcttctgccaaacaaaatagaagaggggacaatggatcgccttgtctaactccccttg |
766 |
Q |
| |
|
||||||| ||||| ||||| | |||||| |||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
15088944 |
ctactcaaaacttcctctgcaagacaaaaaagaagaggggacaaagggtccccttgtcttactccccttg |
15089013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 32020761 - 32020708
Alignment:
| Q |
316 |
gccttccatgctgagagttttgatttgattttgtcagctatgggttgaagatga |
369 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
32020761 |
gccttccaagcagatagttttgctttgattttgtcagctactggttgaagatga |
32020708 |
T |
|
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