View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12748_high_9 (Length: 308)
Name: NF12748_high_9
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 8368579 - 8368290
Alignment:
| Q |
1 |
ataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368579 |
ataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
8368480 |
T |
|
| Q |
101 |
caaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga |
200 |
Q |
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| T |
8368479 |
caaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga |
8368380 |
T |
|
| Q |
201 |
aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataa |
290 |
Q |
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| T |
8368379 |
aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataa |
8368290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 8400831 - 8401120
Alignment:
| Q |
1 |
ataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8400831 |
ataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
8400930 |
T |
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| Q |
101 |
caaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga |
200 |
Q |
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| T |
8400931 |
caaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga |
8401030 |
T |
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| Q |
201 |
aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataa |
290 |
Q |
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| T |
8401031 |
aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataa |
8401120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 8422408 - 8422697
Alignment:
| Q |
1 |
ataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422408 |
ataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctg |
8422507 |
T |
|
| Q |
101 |
caaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga |
200 |
Q |
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| T |
8422508 |
caaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatgaaggattaga |
8422607 |
T |
|
| Q |
201 |
aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataa |
290 |
Q |
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| T |
8422608 |
aagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataa |
8422697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 8404023 - 8403987
Alignment:
| Q |
230 |
tgaagagaaaagatatggaagattatgagagattagg |
266 |
Q |
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| T |
8404023 |
tgaagagaaaagatattgaggattatgagagattagg |
8403987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 55331091 - 55331029
Alignment:
| Q |
39 |
agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc |
101 |
Q |
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|||||||||||||||||| ||||| |||||| |||||||||| ||| ||||||| ||||||| |
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| T |
55331091 |
agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc |
55331029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 55336526 - 55336466
Alignment:
| Q |
39 |
agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacct |
99 |
Q |
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|||||||||||||||| ||||||||| |||| ||||||| || ||| ||||||||||||| |
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| T |
55336526 |
agcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacct |
55336466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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