View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12748_low_2 (Length: 543)
Name: NF12748_low_2
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 229 - 533
Target Start/End: Complemental strand, 4933869 - 4933564
Alignment:
| Q |
229 |
tgattttagcagatcaaaatttgaaggcaaatgcaatgtgatttaaattgtgtatattttcaaaatatctgcaagttgtaaaagatatataaaaattaga |
328 |
Q |
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| T |
4933869 |
tgattttagcacatcaaaatttgaaggcaaatgcaatgtcatttaaattgtgcatattttcaaaatatctgcaagttgtaaaagataaataaaaattaga |
4933770 |
T |
|
| Q |
329 |
gagatcaagaaaaacagttgtccatactatgtatcaattgtcataattgttaaaaa-tgacacttattttaaaacagaaaatatcatacctcagctatga |
427 |
Q |
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| T |
4933769 |
gagatcaagaaaaacagttgtccatactatgtatcaattgtcataattgttaaaaaatgacacttattttaaaacagaaaatatcatacctcagctatga |
4933670 |
T |
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| Q |
428 |
tggttatgtcaagttttgtggttccaaatagcaatgcactactactagtgactgatagatgaagattctctatctcttggattatgttcatcaatgcacc |
527 |
Q |
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| T |
4933669 |
tggttatgtcaagttttgtggttccaaatagcaatgcactactactagtgactgatagatgaagattctctatctcttggattatgttcatcaatgcacc |
4933570 |
T |
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| Q |
528 |
cctatg |
533 |
Q |
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| |||| |
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| T |
4933569 |
cttatg |
4933564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 4934062 - 4933909
Alignment:
| Q |
63 |
tgttttaaatttaatgcatgcttagtttctcagttaagtggtattttgctgaaacatcaaaggatatcttaactagtgttccagaggcactatttaacat |
162 |
Q |
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| T |
4934062 |
tgttttaaatttaatgcatgcttagtttctcagttaagtggtattttgctgaaatatcaaaggatatcttaactagtgttccagaggcactatttaacat |
4933963 |
T |
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| Q |
163 |
ttccctta--ttttaataagctcgtcaatatagtggattcaattcaatcacctt |
214 |
Q |
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| T |
4933962 |
ttcccttattttttaataagctcgtcaatatagtggattcaattcaatcacctt |
4933909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 4934157 - 4934106
Alignment:
| Q |
17 |
acaaactaagtaaatgcagcaaataaaatgaacaagtcaatctatctgtttt |
68 |
Q |
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| T |
4934157 |
acaaagtaagtaaatgcagcaaataaaatgaacaagtcaatctatctgtttt |
4934106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 6392583 - 6392623
Alignment:
| Q |
129 |
tcttaactagtgttccagaggcactatttaacatttccctt |
169 |
Q |
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| T |
6392583 |
tcttaaccagtattccagaggcactagttaacatttccctt |
6392623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 48902884 - 48902924
Alignment:
| Q |
129 |
tcttaactagtgttccagaggcactatttaacatttccctt |
169 |
Q |
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||||||||||||| | || |||||||||||||||||||||| |
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| T |
48902884 |
tcttaactagtgtccgaggggcactatttaacatttccctt |
48902924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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