View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12748_low_4 (Length: 429)
Name: NF12748_low_4
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 193 - 410
Target Start/End: Complemental strand, 31054542 - 31054325
Alignment:
| Q |
193 |
tgcatcaacttaacttataatctccaaaattaccatcaccgaataatgactagtgatatatcactaaaa-ttatggaaaatcccctataatttggatggt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
31054542 |
tgcatcaacttaacttataatctccaaaattaccatcaccgaacaatgaccagtgatatatcactaaaaattatggaaaatcccctata-tttggatggt |
31054444 |
T |
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| Q |
292 |
atgatatctctaatggtggactcttgttttatatgtatatattcccatctctcgtgtacaaacactcgatatgggacttttgttttggcaatgttagtaa |
391 |
Q |
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| T |
31054443 |
aagatatctcaaatggtggactcttgttttatatgtatatattcctatctctcgtgtacagacactcgatatgggacttttgttttggcaatgttagtaa |
31054344 |
T |
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| Q |
392 |
aattacttttgctttcttt |
410 |
Q |
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||||| ||||||||||||| |
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| T |
31054343 |
aattaattttgctttcttt |
31054325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 31054624 - 31054565
Alignment:
| Q |
101 |
attttaaattatgttttaatatattgccattatttgaatgatcgtaaccatggaaattac |
160 |
Q |
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| T |
31054624 |
attttaaattatgttttaatatattgccattattcgaatgactggaactatggaaattac |
31054565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 5918536 - 5918572
Alignment:
| Q |
15 |
gaaacactatagtataactaaaacactctaaactcaa |
51 |
Q |
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| T |
5918536 |
gaaacactatagtgtaactaaaacactctaaactcaa |
5918572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 5922223 - 5922259
Alignment:
| Q |
15 |
gaaacactatagtataactaaaacactctaaactcaa |
51 |
Q |
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| T |
5922223 |
gaaacactatagtgtaactaaaacactctaaactcaa |
5922259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 20321752 - 20321831
Alignment:
| Q |
9 |
agcagagaaacactatagtataactaaaacactctaaactcaattacttgaggtacaaattatatcatccttatgtgtat |
88 |
Q |
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| T |
20321752 |
agcagagaaacactatagtataactaaaacactctaaactcaattacttgaggtacaaattatatcatccttatgtgtat |
20321831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 20326466 - 20326545
Alignment:
| Q |
9 |
agcagagaaacactatagtataactaaaacactctaaactcaattacttgaggtacaaattatatcatccttatgtgtat |
88 |
Q |
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| T |
20326466 |
agcagagaaacactatagtataactaaaacactctaaactcaattacttgaggtacaaattatatcatccttatgtgtat |
20326545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 10545482 - 10545524
Alignment:
| Q |
15 |
gaaacactatagtataactaaaacactctaaactcaattactt |
57 |
Q |
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| T |
10545482 |
gaaacactattgtacaactaaaacactctaaactcaattactt |
10545524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 36165045 - 36165111
Alignment:
| Q |
17 |
aacactatagtataactaaaacactctaaactcaattacttgaggtacaaattatatcatccttatgt |
84 |
Q |
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|||||||||||| ||||||| ||||||||||| |||||||||| | |||| |||| ||||| |||||| |
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| T |
36165045 |
aacactatagtacaactaaa-cactctaaactaaattacttgaagcacaagttatttcatctttatgt |
36165111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 32610441 - 32610485
Alignment:
| Q |
44 |
aaactcaattacttgaggtacaaattatatcatccttatgtgtat |
88 |
Q |
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|||||||||||| |||| ||||| |||| |||||||||||||||| |
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| T |
32610441 |
aaactcaattacatgagatacaagttatttcatccttatgtgtat |
32610485 |
T |
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