View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12748_low_5 (Length: 426)
Name: NF12748_low_5
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 43966946 - 43967347
Alignment:
| Q |
16 |
gattgtataaggctaagtgttgggtagttgttgatgttttgttctacctacataggatgactcattagatgtgttctgagattcattattaatatcataa |
115 |
Q |
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| T |
43966946 |
gattgtataaggctaagtgttgggtagttgttgatgttttgttctacctacataggatgactcattagatgtgttctgagattcattattaatatcataa |
43967045 |
T |
|
| Q |
116 |
gttatgttgaatgttaatccagatgaacaattgtaaggatgaaggttgatgttgtccttgtttatagctgtatctattaattaattatatcaacccattt |
215 |
Q |
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| T |
43967046 |
gttatgttgaatgttaatccagatgaacaattgtaaggatgaaggttgatgttgtccttgtttatagctgtatctattaattaattatatcaacccattt |
43967145 |
T |
|
| Q |
216 |
ttatgtatttattttaacggcatattaacgttgggggtaatacgttggtcattatattatttgacagcccgtgggtagttcacattgaagaaaccacaaa |
315 |
Q |
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| T |
43967146 |
ttatgtatttattttaacggcatattaacgttgggggtaatacgttggtcattatattatttgacagcccgtgggtagttcacattgaagaaaccacaaa |
43967245 |
T |
|
| Q |
316 |
atctgtgtacatatttcttctcctaaactgtgatgtactggttattcttcttttacatccataataattaatatttggatggac-ttttgttgtcacagg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
43967246 |
atctgtgtacatatttcttctcctaaactgtgatgtactgattattcttcttttacatccataataattaatatttggatggactttttgttgtcatagg |
43967345 |
T |
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| Q |
415 |
tt |
416 |
Q |
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| T |
43967346 |
tt |
43967347 |
T |
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