View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12748_low_6 (Length: 396)
Name: NF12748_low_6
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 373
Target Start/End: Complemental strand, 16955822 - 16955469
Alignment:
| Q |
20 |
gggggtttgttacctgagcatcagtggaatcggtatcttcacctttaggtggatccccagaattcatcgatcctttcaacggcaactgcaacgaaattat |
119 |
Q |
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| T |
16955822 |
ggggttttgttacctgagcatcagtggaatcggtatcttcacctttaggtggatccccagaattcatcgatcctttcaacggcaactgcaacgaaattat |
16955723 |
T |
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| Q |
120 |
ataatgcagaatgtaacaccgtcagagttcagaaacctctcatccagatgtaaaaagtaatgtattaatttaggtttagtttgagatgttcacaccaaaa |
219 |
Q |
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| T |
16955722 |
ataatgcagaatgtaacaccgtcagagttcagaaacctctcatccagatgtaaaaagtaatgtattaatttaggtttagtttgagatgttcacaccaaaa |
16955623 |
T |
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| Q |
220 |
ttgtggtcacaaatacagaggatgagatgaaaaataaataaatccaaataatcctcatcatcaatatcgtcacgcacaattatcactggccaatacacat |
319 |
Q |
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| T |
16955622 |
ttgtggtcacaaatacagaggatgagatgaaaaataaataaatccaaataatcctcatcatcaatatcgtcacgcacaattatcactggccaatacacat |
16955523 |
T |
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| Q |
320 |
tcaacacaattttaaaccggtttgtttgttaccttagcatcagtagaatcagca |
373 |
Q |
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| T |
16955522 |
tcaacacaattttaaaccggtttgtttgttaccttagcatcagtagaatcagca |
16955469 |
T |
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