View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12748_low_7 (Length: 375)
Name: NF12748_low_7
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 64 - 360
Target Start/End: Original strand, 38317295 - 38317579
Alignment:
| Q |
64 |
aaaaaatcaagcaattcaatataaatgtgatagtcaatctaaagtgctaatgatataaagaaatttcatttcccaatttctatactctcgtcaatcaatt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38317295 |
aaaaaatcaagcaattcaatataaatgtgttagtcaatctaaagtgctaatgatataaagaaatttcatttcccaatttctatactctcgtcaatcaatt |
38317394 |
T |
|
| Q |
164 |
tgattcctaattgatggatggaagtatagtttaaggacactttagtttattttaatagtttatggatcaatgagaatggatcaatgattgttcttttaca |
263 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
38317395 |
tgatccctaattgatgggtggaagtatagtttaaggacactttagtttattttaatagtttatggatcaatgaga------gaatgattgtttttttaca |
38317488 |
T |
|
| Q |
264 |
ttgnnnnnnncaaatggatcaataatattttaccaataccaatacattttgaaactagtttattccttatccaactgttcatcccatgtattctcag |
360 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38317489 |
ttgtttttttcaaatggatcaataatattt------taccaatacattctgaaactagtttattccttatccaaatgttcatcccatgtattctcag |
38317579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 33726530 - 33726489
Alignment:
| Q |
184 |
gaagtatagtttaaggacactttagtttattttaatagttta |
225 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
33726530 |
gaagtatagtttagggacattttagtttattttaatagttta |
33726489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University