View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12748_low_8 (Length: 347)
Name: NF12748_low_8
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 44306035 - 44305730
Alignment:
| Q |
18 |
taaactcatccctcatcaccctattaatgaaactaataaatactatactcgtacgt--agtactacttagcaaaatcaatttagggtggtccttttatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44306035 |
taaactcatccctcatcaccctattaatgaaactaataaata---tactcgtacgtggagtactacttagcaaaatcaatttagggtggtccctttatta |
44305939 |
T |
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| Q |
116 |
tgataaaaacgtgtatttatacnnnnnnnn-tcctaaccggaaacattgctct-------------aagccaacaattaagttggtggtggagaaaccgg |
201 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44305938 |
tgataaaaacgtgtatttatacaaaaaaaaatcctaaccggaaacattgctctcagagaactatagaagccaacaattaagttggtggtggagaaaccgg |
44305839 |
T |
|
| Q |
202 |
ataatgcatgcatggctcaaaacatgaagcaagagacaattattatgatgctaatacagctaccggccattagtgatttgccgtaaatatgtcactttca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44305838 |
ataatgcatgcatggctcaaaacatgaagcaagagacaattattatgatgctaatacagctaccggccattagtgatttgccgtaaatatgtcactttca |
44305739 |
T |
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| Q |
302 |
ttagaagag |
310 |
Q |
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||||||||| |
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| T |
44305738 |
ttagaagag |
44305730 |
T |
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