View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12748_low_9 (Length: 313)
Name: NF12748_low_9
Description: NF12748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12748_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 3002778 - 3003071
Alignment:
| Q |
1 |
ggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatgaaaggtgtggta |
100 |
Q |
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| T |
3002778 |
ggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatgaaaggtgtggta |
3002877 |
T |
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| Q |
101 |
gggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcatagaattcgtttgc |
200 |
Q |
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| T |
3002878 |
gggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcatagaattcgtttgc |
3002977 |
T |
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| Q |
201 |
aagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgtgttttacttgttttttcaatgtgcaggggccagg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3002978 |
aagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgttttttacttgttttttcaatgtgcaggggccagg |
3003071 |
T |
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