View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12749_low_2 (Length: 302)
Name: NF12749_low_2
Description: NF12749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12749_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 44632874 - 44632614
Alignment:
| Q |
21 |
ggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44632874 |
ggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgagaat |
44632775 |
T |
|
| Q |
121 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44632774 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgct |
44632675 |
T |
|
| Q |
221 |
ttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgcagc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44632674 |
ttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgcagc |
44632614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 44683539 - 44683279
Alignment:
| Q |
21 |
ggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaat |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
44683539 |
ggaggcagccccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaat |
44683440 |
T |
|
| Q |
121 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44683439 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgct |
44683340 |
T |
|
| Q |
221 |
ttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgcagc |
281 |
Q |
| |
|
| ||||||||||| |||||||| || || ||||| |||||||| ||||||||||||||||| |
|
|
| T |
44683339 |
taatttgcaagattttctctgcttcagccttctctttagctgccaacctcattcttgcagc |
44683279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 44654740 - 44654480
Alignment:
| Q |
21 |
ggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaat |
120 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
44654740 |
ggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaat |
44654641 |
T |
|
| Q |
121 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44654640 |
ccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgct |
44654541 |
T |
|
| Q |
221 |
ttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgcagc |
281 |
Q |
| |
|
| ||||||||||| |||||||| || || ||||| |||||||| ||||||||||||||||| |
|
|
| T |
44654540 |
taatttgcaagattttctctgcttcagccttctctttagctgccaacctcattcttgcagc |
44654480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 44693271 - 44693011
Alignment:
| Q |
21 |
ggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaat |
120 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
44693271 |
ggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaat |
44693172 |
T |
|
| Q |
121 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgct |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44693171 |
ccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccagagagatatttagactcagcctcaccctcggctcgct |
44693072 |
T |
|
| Q |
221 |
ttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgcagc |
281 |
Q |
| |
|
||||||||||||| |||||||| || || ||||| |||||||| | ||||||||||||||| |
|
|
| T |
44693071 |
ttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgcagc |
44693011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 44635968 - 44636228
Alignment:
| Q |
21 |
ggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaat |
120 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
44635968 |
ggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacattaactgaaaat |
44636067 |
T |
|
| Q |
121 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| || |||||||||||||||||||||| |
|
|
| T |
44636068 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacccaccccatggagatatttagattcagcctcaccctcggctcgct |
44636167 |
T |
|
| Q |
221 |
ttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgcagc |
281 |
Q |
| |
|
||| ||||||||||||||||||||| || || || |||||||| | |||||||||||||| |
|
|
| T |
44636168 |
ttacttgcaagatcttctctgcctctgccttttctttagctgccactctcattcttgcagc |
44636228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 44625585 - 44625430
Alignment:
| Q |
21 |
ggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaat |
120 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
44625585 |
ggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaat |
44625486 |
T |
|
| Q |
121 |
ccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
44625485 |
ccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacc |
44625430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 281
Target Start/End: Complemental strand, 3205260 - 3205010
Alignment:
| Q |
31 |
ccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacac |
130 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||| || | ||||| |||||||||||||| ||| |||| || || ||||| | || ||| ||| ||| | |
|
|
| T |
3205260 |
ccaatttccttcatggtgtcgaagtattgagtcaccaacaccatgtccatgacatctttagcagttgttccgggaacattctctgagaatgcaagcacgc |
3205161 |
T |
|
| Q |
131 |
tgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaa |
230 |
Q |
| |
|
||||||||| || || ||||| ||||||||||||||||| ||||| | || || ||||||||||||||||| || || || ||| ||| || ||||| |
|
|
| T |
3205160 |
tgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgagtcctgacagatatttggactcagcttctccttcagctttcttgatctgcaa |
3205061 |
T |
|
| Q |
231 |
gatcttctctgcctccgctttctccttagctgctaacctcattcttgcagc |
281 |
Q |
| |
|
||||| ||||| || || ||||| || || || ||||||||||||||||| |
|
|
| T |
3205060 |
tatcttttctgcttcagccttctcgttcgcagccaacctcattcttgcagc |
3205010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 25103000 - 25103060
Alignment:
| Q |
31 |
ccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttg |
91 |
Q |
| |
|
||||| || ||||| |||||||||||||| || ||||| ||||| ||||||||||| |||| |
|
|
| T |
25103000 |
ccaatctccttcaatgtgtcaaagtattgggtcacaagaaccatgtccatgacatcctttg |
25103060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University