View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_12 (Length: 620)
Name: NF1274_high_12
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_12 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 529 - 620
Target Start/End: Original strand, 31397653 - 31397743
Alignment:
| Q |
529 |
tcttagaaatatagttgaattgaatatttaaaagaagcaaattctagttggactagatttgcattttaatcccaatagcaaattctagttga |
620 |
Q |
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| T |
31397653 |
tcttagaaatatagttgaaatcaatagttaaaagaagcaaattctagttggactagatttgtattttaat-cgaaaagcaaattctagttga |
31397743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 31644889 - 31644816
Alignment:
| Q |
9 |
caagaatataattggaaaccctacaaggagcataagataacgctgctcttgcaagagtatgagttctaccattt |
82 |
Q |
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| T |
31644889 |
caagaatgtaattggaaaccctacaaggagcataagataacaccgttcttgcaagagtacaagttttaccattt |
31644816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 532 - 600
Target Start/End: Original strand, 31997217 - 31997285
Alignment:
| Q |
532 |
tagaaatatagttgaattgaatatttaaaagaagcaaattctagttggactagatttgcattttaatcc |
600 |
Q |
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| T |
31997217 |
tagaaatatagttgaattcaataattaaaagaagcgaatttgagttggactagatttgtatgttaatcc |
31997285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 31644308 - 31644267
Alignment:
| Q |
470 |
taaagtgtaattaaaccttataaaaatatcatttaactttta |
511 |
Q |
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| T |
31644308 |
taaagtgtaattaaaccttataaaaataccattttactttta |
31644267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 31644367 - 31644317
Alignment:
| Q |
374 |
tatcaacacaaacacgatacgcacttttcaccaaatacaaacccttgtcaa |
424 |
Q |
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| T |
31644367 |
tatcaacacaaacacgatatgtactttttaccgaatacaaaccattgtcaa |
31644317 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 595
Target Start/End: Complemental strand, 33357019 - 33356956
Alignment:
| Q |
532 |
tagaaatatagttgaattgaatatttaaaagaagcaaattctagttggactagatttgcatttt |
595 |
Q |
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| T |
33357019 |
tagacatatagttaaatttaataattaaaagaagcagattttagttggactaaatttgtatttt |
33356956 |
T |
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