View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_14 (Length: 574)
Name: NF1274_high_14
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 6 - 545
Target Start/End: Original strand, 593772 - 594315
Alignment:
| Q |
6 |
ctcgaataatatgaagaagcatggttttgccggaggatgcatcacccatgatgctgcaaataggcgactggaggttcccagcactcggcttagaaggaac |
105 |
Q |
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| T |
593772 |
ctcgaatacaatgaagaagcatggttttgccggaggatgcatcacccatgatgctgcaaataggcgaccggaggttcccagcactcggcttagaaggaac |
593871 |
T |
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| Q |
106 |
agcagacaattgctttgtatgttgagtttcaccagccaccacagggttgaaaacagttctatttgtagcacctggtgtgtaaatagtatatattaggtta |
205 |
Q |
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| T |
593872 |
agcagacaattgctttgtatgttgagtttcatcagccaccacagggttgaaaacagttctatttgtagcacctggtgtgtaaatagtatatattaggtta |
593971 |
T |
|
| Q |
206 |
caacatgatctatctgatagatattatagtttaaccattatcatcatcaaaatcataattctaaagatttagttagcattacctttcttcatgaccggag |
305 |
Q |
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| T |
593972 |
caacattatctatctgatagatattatagtttaaccattatcatcatcaaaatcataattctaaagatttagttagcattacctttcttcatgaccggag |
594071 |
T |
|
| Q |
306 |
cctccctcgaattccaaccgccttgatactgcggaggaggaggacgattctcttggccgccacccattttttcagattagggttttcaaaccaccaataa |
405 |
Q |
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| T |
594072 |
cctccctcgaattccaaccgccttgatactgcggaggaggaggacgattctcttggccgccacccattttttcagattagggttttcaaaccaccaataa |
594171 |
T |
|
| Q |
406 |
ttggatcgattcccacggattttgaacggaaaataaacgagattcgtgtatgattcgatgaacgaaagagaaaatcagatttgatcga----tcgatcgc |
501 |
Q |
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| T |
594172 |
ttggatcgattcccacggattttgaacggaaaataaacgagattcgtgtatgattcgatgaacgaaagagaaaatcagatttgatcgatcgctcgctcgc |
594271 |
T |
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| Q |
502 |
tcagaaaccaaaacttggaaaactaggagaataaacgatcaata |
545 |
Q |
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| T |
594272 |
tcagaaaccaaaacttggaaaactaggagaataaacgatcaata |
594315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 182291 - 182225
Alignment:
| Q |
45 |
catcacccatgatgctgcaaataggcgactggaggttcccagcactcggcttagaaggaacagcaga |
111 |
Q |
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||||||| ||||||| ||||||||||||| | ||||||||| ||| ||||||| |||| |||||||| |
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| T |
182291 |
catcacctatgatgcagcaaataggcgaccgtaggttcccatcacccggcttacaaggcacagcaga |
182225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 44626546 - 44626493
Alignment:
| Q |
49 |
acccatgatgctgcaaataggcgactggaggttcccagcactcggcttagaagg |
102 |
Q |
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| T |
44626546 |
acccatgatgcagcaaattggcgaccgaaggttcccttcactcggcttagaagg |
44626493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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