View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_23 (Length: 479)
Name: NF1274_high_23
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_23 |
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| [»] scaffold0047 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 29 - 466
Target Start/End: Original strand, 35112594 - 35113031
Alignment:
| Q |
29 |
accagctacagcaagtccgaaacatttggattacttattattcattattaggatctataacctttgacgaaaagaagaagagcaaggttttgacagaaaa |
128 |
Q |
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| T |
35112594 |
accagctacagcaagtccgaaacatttggattacttattattcattattaggatctataacctttgacgaaaagaagaagagcaaggttttgacagaaaa |
35112693 |
T |
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| Q |
129 |
ccttgtttggtttgtagaataacaaccttaacacacctcaagatagacccaaagctgcaacgaaaattgcagtcataacacacctnnnnnnnccaaagcc |
228 |
Q |
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| T |
35112694 |
ccttgtttggtttgtagaataacaaccttaacacacctcaagatagacccaaagctgcaacgaaaattgcagtcataacacacctcaaaaaaccaaagcc |
35112793 |
T |
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| Q |
229 |
gaaacactcttctagggtaagcaaagaaaaacatactacaaacaaacttaatcactaaccataaaacatcccagcagctatcgagatcttgaatagggta |
328 |
Q |
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| T |
35112794 |
gaaacactcttctagggtaagcaaagaaaaacatactacaaacaaacttaatcactaaccataaaacatcccagcagctatcgagatcttgaatagggta |
35112893 |
T |
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| Q |
329 |
ggaaatctatatttagcaaagatgctacagcacaacagctatctccagccgcctcattttctttttcgatttcatgatgaatatattttgtgtcatggct |
428 |
Q |
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| T |
35112894 |
ggaaatctatatttagcaaagatgctacagcacaacagctatctccagtcgcctcattttctttttagatttcatgatgaatatattttgtgtcatggct |
35112993 |
T |
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| Q |
429 |
ttgtgtaactgtagcttaggagattggcctcaacatat |
466 |
Q |
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| T |
35112994 |
ttgtgtaactgtagcttaggagattggcctcaacatat |
35113031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 425
Target Start/End: Original strand, 60076 - 60232
Alignment:
| Q |
271 |
caaacttaatcactaaccataaaacatcccagcagctatcgagatcttgaata-gggtaggaaatctatatttagcaaagatgctacagcacaacagcta |
369 |
Q |
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||||||||||||| |||||||||||| |||| | |||||| || ||||||| | | |||||||||| || | |||| |||||||||| || | ||| ||| |
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| T |
60076 |
caaacttaatcacaaaccataaaacaacccaactgctatcaaggtcttgaacatgagtaggaaatccatctatagcgaagatgctacggctctacaacta |
60175 |
T |
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| Q |
370 |
tctccagccgcctcattttctttttcgatttc-atgatgaatatattttgtgtcatg |
425 |
Q |
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| T |
60176 |
tcttcagtcacttcatttgctttttcgacctcaacgatgaatatcttttgtgccatg |
60232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 425
Target Start/End: Complemental strand, 71274 - 71118
Alignment:
| Q |
271 |
caaacttaatcactaaccataaaacatcccagcagctatcgagatcttgaata-gggtaggaaatctatatttagcaaagatgctacagcacaacagcta |
369 |
Q |
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||||||||||||| |||||||||||| |||| | |||||| || ||||||| | | |||||||||| || | |||| |||||||||| || | ||| ||| |
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| T |
71274 |
caaacttaatcacaaaccataaaacaacccaactgctatcaaggtcttgaacatgagtaggaaatccatctatagcgaagatgctacggctctacaacta |
71175 |
T |
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| Q |
370 |
tctccagccgcctcattttctttttcgatttc-atgatgaatatattttgtgtcatg |
425 |
Q |
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| T |
71174 |
tcttcagtcacttcatttgctttttcgacctcaacgatgaatatcttttgtgccatg |
71118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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