View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1274_high_26 (Length: 442)
Name: NF1274_high_26
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 29 - 437
Target Start/End: Complemental strand, 36085334 - 36084925
Alignment:
| Q |
29 |
agtactcactacgtataagactactcaacaaattattaaaattccaaaggtgccagatatacttaagttggcttttgagtaaaggaggcagtaaatattt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36085334 |
agtactcactacgtataagactactcaacaaattattaaaattccaaaggtgccagatatacttaagttggcttttgagtaaaggaggcagtaaatattt |
36085235 |
T |
|
| Q |
129 |
gtttagctatgatagactttttgagttttcttccattaagtttattgagtccattatgaaactaatcttcgagtctgctacggaacatttgctttatctt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
36085234 |
gtttagctatgatagactttttgagttttcttccactaagtttattggatccgctatgaaactaatcttcgagtccgctataggacatttgctttatctt |
36085135 |
T |
|
| Q |
229 |
tt-accggtgttgagctacctcccaaatatataatttcaaaacttgagttcttttcctggaggagagtcatgtcgccaactctcccaataccatgttggt |
327 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
36085134 |
tttaccagtgttgagctaccttccaaatatataatttcaaaacttgagttctttttctggaggaaagtcatgtcgccaactctcccaataccatgttgat |
36085035 |
T |
|
| Q |
328 |
aaacttatgagttttaacattcatacaatcacattcactagtatgtcataatgcattattgttgtagggaatatatgcataaatatctatattgtaaaat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36085034 |
aaacttatgagttttaacattcatacaatcacattcactaatatgtcataatgcattattgttgtagggaatatatgcataaatatctatattgtaaaat |
36084935 |
T |
|
| Q |
428 |
attattggac |
437 |
Q |
| |
|
|| ||||||| |
|
|
| T |
36084934 |
atgattggac |
36084925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 1663679 - 1663731
Alignment:
| Q |
275 |
gttcttttcctggaggagagtcatgtcgccaactctcccaataccatgttggt |
327 |
Q |
| |
|
||||||||||| | |||||||||||| | |||||||||||| | ||||||||| |
|
|
| T |
1663679 |
gttcttttcctaggggagagtcatgttgtcaactctcccaacaacatgttggt |
1663731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University