View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_28 (Length: 432)
Name: NF1274_high_28
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 100 - 421
Target Start/End: Complemental strand, 9380395 - 9380074
Alignment:
| Q |
100 |
tctttcactcttgtaaacacattttatttgagttttgccaaaagaaaatgataagttgaagctttcttggcttcctttattctcaagtattcatctcctt |
199 |
Q |
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| T |
9380395 |
tctttcactcttgtaaacacattttatttgagttttgccaaaagaaaatgataagttgaagctttcttggcttcctttattctcaagtactcatctcctt |
9380296 |
T |
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| Q |
200 |
ttggttatgcaaccaaacatttttatttgttttaattgaactaaatgcagtagtagactacattaactattcgcgaatatcaatattaaaagaattttag |
299 |
Q |
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| T |
9380295 |
ttggttatgcaaccaaacatttttatttgttttaattgaactaaatgcagtagtagactacattaactattcacgaatatcaatattaaaagaactttag |
9380196 |
T |
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| Q |
300 |
ttgtcacttaaagggtctgtttggtttaacttatttgtacgcacttgtataacaattttgaagaacctatcaaaacagcttatgagatgtccgtaactta |
399 |
Q |
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| T |
9380195 |
ttatcacttaaagggtctgtttggtttaacttatttgtacgcatttgtataactattttgaagaacctttcaaaactgcttatgagatgtccgtaactta |
9380096 |
T |
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| Q |
400 |
cttccatagactctccagaata |
421 |
Q |
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| T |
9380095 |
cttccatagactctccagaata |
9380074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 9380521 - 9380463
Alignment:
| Q |
28 |
catcaactgcattaaagaagcaatatatcaaaacttattttagtagttggtttttgggt |
86 |
Q |
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| T |
9380521 |
catcaactgcattaaagaagcaatatatcaaaactaattttagaagttggtttttgggt |
9380463 |
T |
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