View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_high_30 (Length: 423)

Name: NF1274_high_30
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_high_30
NF1274_high_30
[»] chr3 (27 HSPs)
chr3 (27-282)||(28037553-28037808)
chr3 (27-279)||(28151764-28152015)
chr3 (27-273)||(17744278-17744522)
chr3 (27-273)||(19045598-19045842)
chr3 (27-226)||(8539085-8539287)
chr3 (27-158)||(27458742-27458873)
chr3 (87-259)||(11421393-11421565)
chr3 (171-279)||(27920463-27920570)
chr3 (225-282)||(28037839-28037896)
chr3 (27-154)||(28150081-28150208)
chr3 (27-154)||(28186033-28186160)
chr3 (29-110)||(27920361-27920441)
chr3 (29-154)||(28479764-28479889)
chr3 (179-271)||(18079010-18079102)
chr3 (167-267)||(27430770-27430870)
chr3 (27-154)||(28161990-28162117)
chr3 (57-190)||(26127278-26127411)
chr3 (29-154)||(28508947-28509072)
chr3 (114-186)||(26110202-26110274)
chr3 (35-158)||(11421110-11421232)
chr3 (57-190)||(26177328-26177461)
chr3 (37-121)||(28136448-28136532)
chr3 (168-211)||(18076984-18077027)
chr3 (96-186)||(26139089-26139179)
chr3 (22-70)||(27954436-27954483)
chr3 (87-186)||(28162792-28162891)
chr3 (48-144)||(27776658-27776754)
[»] scaffold0922 (1 HSPs)
scaffold0922 (27-279)||(1854-2104)
[»] chr2 (1 HSPs)
chr2 (27-279)||(8020946-8021195)
[»] scaffold0257 (1 HSPs)
scaffold0257 (27-101)||(19191-19265)
[»] scaffold1142 (1 HSPs)
scaffold1142 (81-158)||(526-603)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 27 - 282
Target Start/End: Original strand, 28037553 - 28037808
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28037553 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttctgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 28037652  T
Q  127 aatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggta 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28037653 aatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggta 28037752  T
Q  227 atttctttcttcgtttaatttttagttaattttcttgtgctcaaatatgcatattc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28037753 atttctttcttcgtttaatttttagttaattttcttgtgctcaaatatgcatattc 28037808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 28151764 - 28152015
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    |||||||||||| ||||||| ||||||||||||| ||| ||| ||| ||| ||||||| |||||| || ||||||||||||||||||||||| ||| |||    
T  28151764 agttacctcatcgccctttttattttgaagtttagctctcttgtttcccatcttttgt-cagtttctctaaatgatgataatgtcatgaaagcaagctca 28151862  T
Q  127 aatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggta 226  Q
    |||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  28151863 aatactgaggatcagttttcaaaggatgataacatattagtttccaaatcaagaccctcttctattgcatctcagtttccttcaaagccttctgaaggta 28151962  T
Q  227 atttctttcttcgtttaatttttagttaattttcttgtgctcaaatatgcata 279  Q
     ||| |||||| |||| ||||||| ||||||| |||||||| |||||||||||    
T  28151963 ttttatttctttgttttatttttaattaatttacttgtgcttaaatatgcata 28152015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 17744522 - 17744278
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||||  |||| ||||| |||||| || |||||||||| ||||  |||||||||| |||    
T  17744522 agttacctcatcgctcttttcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaagctca 17744423  T
Q  127 aatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggta 226  Q
    |||||||||||||| ||| ||||  ||||||| || |||||||||||||||| ||| |||| ||||||||| || | |||||||| |||| ||| |||||    
T  17744422 aatattgaggatcaatttcctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactggaggta 17744323  T
Q  227 atttctttcttcgtttaatttttagttaattttcttgtgctcaaata 273  Q
     ||| || |||| |||  | | || ||||||||||||||||||||||    
T  17744322 ttttattgcttcattt--tatctaattaattttcttgtgctcaaata 17744278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 19045842 - 19045598
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||||  |||| ||||| |||||| || |||||||||| ||||  |||||||||| |||    
T  19045842 agttacctcatcgctcttttcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaagctca 19045743  T
Q  127 aatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggta 226  Q
    |||||||||||||| ||| ||||  ||||||| || |||||||||||||||| ||| |||| ||||||||| || | |||||||| |||| ||| |||||    
T  19045742 aatattgaggatcaatttcctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactggaggta 19045643  T
Q  227 atttctttcttcgtttaatttttagttaattttcttgtgctcaaata 273  Q
     ||| || |||| |||  | | || ||||||||||||||||||||||    
T  19045642 ttttattgcttcattt--tatctaattaattttcttgtgctcaaata 19045598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 8539287 - 8539085
Alignment:
Q  27 agttacctcatcacccttttcatttt---gaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagt 123  Q
    ||||||||  ||||||||||||||||   |||||| ||||| ||||||| ||||| ||||||||| || || ||||||||||  || ||||||||||||     
T  8539287 agttaccttgtcacccttttcattttcatgaagttgaactctcttctttcccaccctttgttcagcttttctaaatgatgatgttgccatgaaagtaagc 8539188  T
Q  124 tcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaag 223  Q
    ||||||||| || || ||||| |||||||||| || || ||||||||||||||||||| ||||| |||| ||||||| | |||||||| |||||||||||    
T  8539187 tcaaatattcagaatgagtttcctaaggatgaagaaatattagtttccaaatcaagactctcttgtattccatctcagtctccttcaaagccttctgaag 8539088  T
Q  224 gta 226  Q
    |||    
T  8539087 gta 8539085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 27458873 - 27458742
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    ||||| || ||||||||||||||||||||||||||| | ||||||| | || ||||||||||||| || ||||||||||  |||||| |||||||| |||    
T  27458873 agttatcttatcacccttttcattttgaagtttaaccctcttctttgcaactttttgttcagtttctctaaatgatgatgctgtcataaaagtaagctca 27458774  T
Q  127 aatattgaggatcagttttctaaggatgatga 158  Q
    ||||||||| |||||||| |||| ||||||||    
T  27458773 aatattgagaatcagtttcctaacgatgatga 27458742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 87 - 259
Target Start/End: Original strand, 11421393 - 11421565
Alignment:
Q  87 agtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctct 186  Q
    ||||| || ||||||||||  | ||| ||||||||| ||||||| |||||| |||||| ||| ||||||||| || ||||||||||||||||||||||||    
T  11421393 agtttctcgaaatgatgatgctttcaagaaagtaagatcaaatactgaggaacagtttcctacggatgatgatatattagtttccaaatcaagaccctct 11421492  T
Q  187 tctattgcatctcattttccttcaatgccttctgaaggtaatttctttcttcgtttaatttttagttaatttt 259  Q
    | |||||||||||| | ||||| ||  |||  |||||||| ||| || ||||  || ||||||| ||||||||    
T  11421493 tatattgcatctcagtatcctttaaaacctgttgaaggtattttattgcttcagtttatttttaattaatttt 11421565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 27920463 - 27920570
Alignment:
Q  171 caaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggtaatttctttcttcgtttaatttttagttaattttcttgtgctcaa 270  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| ||| ||  ||| ||| ||||||| ||| ||||||| |||||||    
T  27920463 caaatcaagaacctcttctattgcatctcagtttccttcaaagccttctgaaggtattttattgtttcattttatttttaattagttttctt-tgctcaa 27920561  T
Q  271 atatgcata 279  Q
    |||||||||    
T  27920562 atatgcata 27920570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 28037839 - 28037896
Alignment:
Q  225 taatttctttcttcgtttaatttttagttaattttcttgtgctcaaatatgcatattc 282  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28037839 taatttctttcttcgtttaatttttagttaatttttttgtgctcaaatatgcatattc 28037896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 28150081 - 28150208
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |  ||||||||||||||||| || |||||| |||  |||| | |||||||  |||    
T  28150081 agttatctcatcacccttttcattttgaagtttaaatctcttctctcacaccttttgttcagtttctctaaatgaggatgctgtcgtaaaagtaacctca 28150180  T
Q  127 aatattgaggatcagttttctaaggatg 154  Q
    | | ||||||| || |||||||||||||    
T  28150181 attgttgaggaacaattttctaaggatg 28150208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 28186033 - 28186160
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |  ||||||||||||||||| || ||||||||||  ||| || |||||||  |||    
T  28186033 agttatctcatcacccttttcattttgaagtttaaatctcttctctcacaccttttgttcagtttctctaaatgatgatgctgttataaaagtaacctca 28186132  T
Q  127 aatattgaggatcagttttctaaggatg 154  Q
    | | ||||||| |  |||||||||||||    
T  28186133 attgttgaggaaccattttctaaggatg 28186160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 27920361 - 27920441
Alignment:
Q  29 ttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgt 110  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||  |||||| || |||||||||||||||    
T  27920361 ttacctcatcacc-ttttcattttgaagtttaactctcttctttcccaccttttggacagtttctctaaatgatgataatgt 27920441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 28479889 - 28479764
Alignment:
Q  29 ttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttcaaa 128  Q
    ||||||||||||||||| ||||||||||||||| || ||||| |  ||||||||| ||||||| |  ||||||||||  |||||| |||||||  ||||     
T  28479889 ttacctcatcaccctttgcattttgaagtttaattctcttctctcacaccttttgctcagtttctgtaaatgatgattctgtcataaaagtaacctcaat 28479790  T
Q  129 tattgaggatcagttttctaaggatg 154  Q
    | ||||||| || || ||||||||||    
T  28479789 tgttgaggaacaattatctaaggatg 28479764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 18079102 - 18079010
Alignment:
Q  179 gaccctcttctattgcatctcattttccttcaatgccttctgaaggtaatttctttcttcgtttaatttttagttaattttcttgtgctcaaa 271  Q
    |||||||||||||| ||| ||| |||||||||| ||||| |||||||| ||| ||||||||||| |||||||  ||||| || ||||||||||    
T  18079102 gaccctcttctattacatgtcagtttccttcaaagccttatgaaggtattttatttcttcgttttatttttaaataattctcctgtgctcaaa 18079010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 27430870 - 27430770
Alignment:
Q  167 tttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggtaatttctttcttcgtttaatttttagttaattttcttgtgc 266  Q
    ||||||||||||||||||||| |||||||||||| | |||||||| |||| |||||| || ||| || |||| ||  | ||||| |||||||||||||||    
T  27430870 tttccaaatcaagaccctcttatattgcatctcagtgtccttcaaagcctgctgaagttattttattgcttcattgtagttttaattaattttcttgtgc 27430771  T
Q  267 t 267  Q
    |    
T  27430770 t 27430770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 28161990 - 28162117
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |  ||||||||||||||||| || |||||| |||   ||||| |||||||  |||    
T  28161990 agttatctcatcacccttttcattttgaagtttaaatctcttctctcacaccttttgttcagtttctctaaatgacgatgccgtcataaaagtaacctca 28162089  T
Q  127 aatattgaggatcagttttctaaggatg 154  Q
    | | ||||||| |  | |||||||||||    
T  28162090 attgttgaggaacgatattctaaggatg 28162117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 26127411 - 26127278
Alignment:
Q  57 tttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgat 156  Q
    ||||||||  ||||||||||| | |||||||| || || |||| |||||  | ||| ||||||||| |||||||||||||| || |||  ||||||||||    
T  26127411 tttaactctattcttttccacatgttgttcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaatttcataaggatgat 26127312  T
Q  157 gacatgttagtttccaaatcaagaccctcttcta 190  Q
     | ||  ||||||||||||| | |||||||||||    
T  26127311 aatataatagtttccaaatctaaaccctcttcta 26127278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 28509072 - 28508947
Alignment:
Q  29 ttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttcaaa 128  Q
    ||||||||||||||||| ||||||||||||||| || ||||| |  ||||||||| ||||||| |  ||||||||||  |||||| |||||||  ||||     
T  28509072 ttacctcatcaccctttgcattttgaagtttaattctcttctctcacaccttttgctcagtttctgtaaatgatgattctgtcataaaagtaacctcaat 28508973  T
Q  129 tattgaggatcagttttctaaggatg 154  Q
    | ||||||| ||  | ||||||||||    
T  28508972 tgttgaggaacaactatctaaggatg 28508947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 26110274 - 26110202
Alignment:
Q  114 gaaagtaagttcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctct 186  Q
    ||||||||| |||||||||||||| || ||||||||||||||||| ||  ||||||||||||| | |||||||    
T  26110274 gaaagtaagctcaaatattgaggaacaattttctaaggatgatgatataatagtttccaaatctaaaccctct 26110202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 11421110 - 11421232
Alignment:
Q  35 catcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttcaaatattga 134  Q
    ||||||||||||||||| |||||| ||||| ||||||| ||||  |||| ||||||  || ||||||||||  ||||||||||| |||  ||||||||||    
T  11421110 catcacccttttcatttagaagttgaactctcttctttcccactgtttg-tcagttgctctaaatgatgatgctgtcatgaaagcaagcacaaatattga 11421208  T
Q  135 ggatcagttttctaaggatgatga 158  Q
    | | || ||  |||||||||||||    
T  11421209 gcaacatttacctaaggatgatga 11421232  T

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Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 26177461 - 26177328
Alignment:
Q  57 tttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgat 156  Q
    ||||||||  ||||||||||| | |||||||| || || |||| |||||  | ||| ||||||||| |||| ||||||||| || |||  ||||||||||    
T  26177461 tttaactctattcttttccacatgttgttcaggttctctaaatcatgattctttcaagaaagtaagctcaattattgaggaacaatttcataaggatgat 26177362  T
Q  157 gacatgttagtttccaaatcaagaccctcttcta 190  Q
     | ||  ||||||||||||| | |||||||||||    
T  26177361 aatataatagtttccaaatctaaaccctcttcta 26177328  T

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Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 28136448 - 28136532
Alignment:
Q  37 tcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaa 121  Q
    ||||||||||||||||||| |||||||| ||||| |  |||| |||||||||||| |  ||||||||||  |||||| |||||||    
T  28136448 tcacccttttcattttgaactttaactctcttctctcacaccatttgttcagtttctgtaaatgatgatgctgtcataaaagtaa 28136532  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 18077027 - 18076984
Alignment:
Q  168 ttccaaatcaagaccctcttctattgcatctcattttccttcaa 211  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  18077027 ttccaaatcacgaccctcttctattgcatctcagtttccttcaa 18076984  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 26139179 - 26139089
Alignment:
Q  96 aaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctct 186  Q
    ||||||||||  | ||| ||||||||| |||||||||||||| |||||| ||| ||||||||| ||  ||||||| ||||| | |||||||    
T  26139179 aaatgatgattctttcaagaaagtaagctcaaatattgaggaacagtttcctatggatgatgatataatagtttctaaatctaaaccctct 26139089  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 27954436 - 27954483
Alignment:
Q  22 tcatcagttacctcatcacccttttcattttgaagtttaactcgcttct 70  Q
    |||| ||||||||||||||| |||||||||||||||||||||| |||||    
T  27954436 tcataagttacctcatcacc-ttttcattttgaagtttaactctcttct 27954483  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 28162792 - 28162891
Alignment:
Q  87 agtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctct 186  Q
    ||||| || ||||||||||  | ||| ||||||||| |||||||||||||| || ||| |||||  |||||| ||  ||||||||||||| | |||||||    
T  28162792 agtttctcgaaatgatgatgctttcaagaaagtaagctcaaatattgaggaacaatttcctaagattgatgatataatagtttccaaatctaaaccctct 28162891  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 27776658 - 27776754
Alignment:
Q  48 attttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttt 144  Q
    ||||||||||| || || |||||||||||| | |||||||| || ||| ||| ||| | ||||| |||||||||| ||||  | |||||| ||||||    
T  27776658 attttgaagttgaattctcttcttttccacatgttgttcagcttctcccaataatgttgatgtcgtgaaagtaagctcaataactgaggaacagttt 27776754  T

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Target: scaffold0922 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 1854 - 2104
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    ||||||| ||||||||||||||||||||||||| ||||  || ||| |||| ||||||||||||| |  ||||||||||  | ||||||||||||| |||    
T  1854 agttaccacatcacccttttcattttgaagtttgactc--ttatttcccacattttgttcagtttttttaaatgatgatgctatcatgaaagtaagctca 1951  T
Q  127 aatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggta 226  Q
     ||||||||||||| |||  |||||||||||| || ||||||||||||||||  | || | |||||| |||||| | |||||||| |||| || ||||||    
T  1952 gatattgaggatcaatttcttaaggatgatgaaatattagtttccaaatcaaagctctgtactattgtatctcagtgtccttcaaagcctgctcaaggta 2051  T
Q  227 atttctttcttcgtttaatttttagttaattttcttgtgctcaaatatgcata 279  Q
     ||| || |||| ||| | ||||| |||||||||||||||| |||||||||||    
T  2052 ttttattgcttcattttagttttaattaattttcttgtgctaaaatatgcata 2104  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 8020946 - 8021195
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatgatgataatgtcatgaaagtaagttca 126  Q
    ||||| |||||| ||||||||||||||||||| | ||  ||||||| ||||||||| | |||||| || |||||||||  |||||||||||||||| |||    
T  8020946 agttatctcatcgcccttttcattttgaagttaacctt-cttctttcccaccttttct-cagtttctctaaatgatgacgatgtcatgaaagtaagatca 8021043  T
Q  127 aatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaatgccttctgaaggta 226  Q
    ||||||||| | |||||| | ||||| ||||| || ||||||||||||||||||||||||||||||| |||||| | |||||||| | || || ||||||    
T  8021044 aatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggta 8021143  T
Q  227 atttctttcttcgtttaatttttagttaattttcttgtgctcaaatatgcata 279  Q
     ||| || | || |||  |||  | |||||||||| |||||||||||||||||    
T  8021144 ttttattgcatcattt-ttttaaaattaattttctagtgctcaaatatgcata 8021195  T

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Target: scaffold0257 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 19191 - 19265
Alignment:
Q  27 agttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttttgttcagtttatccaaatga 101  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| |  ||||||||||||||||| || ||||||    
T  19191 agttacctcatcacccttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatga 19265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 526 - 603
Alignment:
Q  81 ttgttcagtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgatga 158  Q
    ||||||||||  || |||||| |||  ||||||||||||||| | |||||||||||| |||||| |||||||||||||    
T  526 ttgttcagttcctctaaatgacgatgttgtcatgaaagtaagcttaaatattgaggaacagtttcctaaggatgatga 603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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