View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1274_high_31 (Length: 414)
Name: NF1274_high_31
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 29 - 402
Target Start/End: Complemental strand, 5178512 - 5178139
Alignment:
| Q |
29 |
aagagggccaagctagaaaaggaaagcaaggtaagaattaaagcaactattatttcctcttttatatgtgtatatttttggtcaaacaatcttattagct |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5178512 |
aagagggccaagctagaaaaggaaagcaaggtaaaaattaaagcaactattatttcctcttttatatgtgtatatttttggtcaaacaatcttattacct |
5178413 |
T |
|
| Q |
129 |
tgattctattctccttagaaaagttgtgcattttgtagcaatatttgtctctcactcttgnnnnnnnnnnnnnnnnnnnnnctcctcatgcacaatgatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5178412 |
tgattctattctccttagaaaagttgtgcattttgtagcaatatttgtctctcactcttgttttttttgtttttgtgttttctcctcatgcacaatgatt |
5178313 |
T |
|
| Q |
229 |
cttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaagaggaacatttatgtgtataagtaactccaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5178312 |
cttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaagaggaacatttatgtgtataagtaagtccaa |
5178213 |
T |
|
| Q |
329 |
gaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178212 |
gaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
5178139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 40190009 - 40190071
Alignment:
| Q |
340 |
taggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
402 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
40190009 |
taggtggttatgatatggaagaaaaagctgctagagcttatgatcaagcagcactcaagtatt |
40190071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 4846707 - 4846646
Alignment:
| Q |
341 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
402 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||| |||| |
|
|
| T |
4846707 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatatt |
4846646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 47753423 - 47753465
Alignment:
| Q |
341 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgat |
383 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47753423 |
aggtggttatgatatggaagagaaagctgcaagagcttatgat |
47753465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University