View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_35 (Length: 394)
Name: NF1274_high_35
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 47692396 - 47692681
Alignment:
| Q |
12 |
aaatatcaactggatcataataacatgcactacacgcaacaaatttgtatcaattcaattcaacatgtatctttgtttataatttatacacatgtataca |
111 |
Q |
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| T |
47692396 |
aaatatcaactggatcataataacatgcactacacgcaacaaatttgtatcaattcaattcaacatgtatctttgtttataatttatacacatgtataca |
47692495 |
T |
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| Q |
112 |
cacgcattgttcctcacttccatgccatgcatgcatgcatggaacaaaattatatatgtatatgacattatttttaaatttctagttagaagaaatttgg |
211 |
Q |
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| T |
47692496 |
cacacattgttcctcatttccatgc----catgcatgcatggaacaaaattatatatgtatatgacattatttttaaatttctagttagaagaaatttga |
47692591 |
T |
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| Q |
212 |
tcccttagaaactatgtttgtctttatgtgtgacgcacttacacagacataaacattggacactcgcagaacgacaccggtgataatttg |
301 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
47692592 |
tcccttagaagttatgtttgtctttatttgtgacgcacttacacagacacaaacattggacactcgcagaaggacaccgatgatcatttg |
47692681 |
T |
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