View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1274_high_4 (Length: 791)
Name: NF1274_high_4
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_4 |
 | |
|
| [»] scaffold0087 (10 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 143 - 763
Target Start/End: Original strand, 5163565 - 5164167
Alignment:
| Q |
143 |
tattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaagaaa |
242 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5163565 |
tattagttggtttaaaccttttagggaatattctcacaggattcattcccaacaacattggtcatatgaaaatgttggaatcactcgacttgtcaagaaa |
5163664 |
T |
|
| Q |
243 |
ccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccactaagc |
342 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5163665 |
ccatctttcaggtaaaatgccaacaaacttttcaaatttgacatttctt------------------ttcaacaacttagaaggcaaaattccactaagc |
5163746 |
T |
|
| Q |
343 |
actcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatcttcgccctggagatagccatg |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
5163747 |
actcaactacaatcttttgatccctctgcatatgtcgggaacagttatgaatgactttgtggacagccactcataaatctttgccctggagatagccatg |
5163846 |
T |
|
| Q |
443 |
acacacatgttaccagtgtagatgaagaatgaagataagctcataaccattgggttttatgttagcttagggattggtctctttaacggctttgtctctt |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5163847 |
acacacatgttaccagtgtagatgaagaatgaagataagctcataaccattgggttttatgttagcttagggcttggtctctttaacggctttgtctctt |
5163946 |
T |
|
| Q |
543 |
tttctcttgtatttattgaaaactaagtttgtgaactc-agccaagtacggactcgaatttcagattttttaatttacataaattatgtannnnnnnnca |
641 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| || |||| ||||||| |||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
5163947 |
tttctcttgtatttattgaaaact-agtttgtgaactcgagtcaagcacggactagaatttcagatttttttatttatttaaattatgtattttttttca |
5164045 |
T |
|
| Q |
642 |
tacaaaaaactattataatgaattttagaagcaaaaattcgcaaagcagcctcaaaacatatttgcaattatagtattgttttatctcatcaacgaatct |
741 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5164046 |
tacaaaaaactattataatgaattttagaagcaaaaattcgcaaagcagcctcaaaacatatttgcaattatagtattgttttatctcatcaacgaatct |
5164145 |
T |
|
| Q |
742 |
atctttatcaaatgtatcgact |
763 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
5164146 |
atctttatgaaatgtatcgact |
5164167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 133 - 383
Target Start/End: Complemental strand, 5889358 - 5889108
Alignment:
| Q |
133 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
232 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||| ||||||| |||| |||||||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5889358 |
aaacttgtggtattagttgatttgaacctttcaggaaatcatctcacaggattaattcccaaaaacattggtcatatggaaatgttggaatcactcgact |
5889259 |
T |
|
| Q |
233 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
332 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5889258 |
tgtcaagaaaccatctttcgggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaataacttagaaggcaaaat |
5889159 |
T |
|
| Q |
333 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||| || ||||| |
|
|
| T |
5889158 |
tccactaagcactcaactacaatcttttgatccttctacatacgtggggaa |
5889108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 133 - 431
Target Start/End: Original strand, 5883851 - 5884143
Alignment:
| Q |
133 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
232 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
5883851 |
aaacttgttgcattagttggtttaaacctttcagggaataatctcacaggaatgattcccaacaacattggtcatatgaaaatgttagaatcacttgact |
5883950 |
T |
|
| Q |
233 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
332 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
5883951 |
tgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaaatttgacatttcttggttacatgaacctgtcgttcaacaacttagaaggcaaaat |
5884050 |
T |
|
| Q |
333 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatcttcgccctgg |
431 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| ||||||| |||| || | |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
5884051 |
tccactaagcactcaactacaaacttttgattcctcttcatatgtgggga------ataatcgactttgtggacaaccgctcataaatctttgccctgg |
5884143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 152 - 423
Target Start/End: Original strand, 5853709 - 5853974
Alignment:
| Q |
152 |
gtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaagaaaccatctttc |
251 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| |||||||| |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
5853709 |
gtttaaacctttcaaggaataatctcacaggattaattcccaataacattggtcatatgaaaatgttagaatcgctcgatttgtcaagaaaccatctttc |
5853808 |
T |
|
| Q |
252 |
aggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccactaagcactcaacta |
351 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
5853809 |
tggtagaatgccaacaagcttttcaaatttaacatctcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccaataagcactcagcta |
5853908 |
T |
|
| Q |
352 |
caatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt |
423 |
Q |
| |
|
||| |||||||| ||| | ||||||| |||| || | |||||||||||| |||||||||||||||| |
|
|
| T |
5853909 |
caaacttttgattcctattcatatgtgggga------ataatcgactttgtggaccaccactcataaatctt |
5853974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 133 - 423
Target Start/End: Original strand, 5881135 - 5881419
Alignment:
| Q |
133 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
232 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||| ||| ||||||| |||| |||||||| |||||| |||||||||||||||| |||||| | |||| |
|
|
| T |
5881135 |
aaactcgtggcattagttggtttagacctttcaggaaatcatctcacaggattaattcccaaaaacattggtcatatgaaaatgttagaatcattggact |
5881234 |
T |
|
| Q |
233 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
332 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||||||| ||||| |
|
|
| T |
5881235 |
tgtcaagaaatcatctctacggtaaaatgccaacaagcttttcaagtttgacatttcttggttacatgaacctgtcgttcaacaatttagaagggaaaat |
5881334 |
T |
|
| Q |
333 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt |
423 |
Q |
| |
|
||||||| | |||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5881335 |
tccactaggtactcaactacaaacttttcatccctctgcatatgtggggaacagt------ggactttgtggacagccactcataaatctt |
5881419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 139 - 387
Target Start/End: Original strand, 5821423 - 5821671
Alignment:
| Q |
139 |
gtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| |||||||||| | ||||||| |||||||| ||| || |||||| | |||||||||| |
|
|
| T |
5821423 |
gtggtattagttggtttaaacctttcaaggaataatctcacaggattcattcctagcaacattggtcatatggaaagtttagaatcattggacttgtcaa |
5821522 |
T |
|
| Q |
239 |
gaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccact |
338 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||||||| ||||||||||| |
|
|
| T |
5821523 |
gaaatcatctctacggtaaaatgccaacaagcttttcaagtttgacatttcttggttacatgaacctgtcattcaacaatttagaagggaaaattccact |
5821622 |
T |
|
| Q |
339 |
aagcactcaactacaatcttttgatccctctgcatatgtcgggaacagt |
387 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| ||||||| ||||||||| |
|
|
| T |
5821623 |
aagcactcaactacaaacttttgatccatcttcatatgtggggaacagt |
5821671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 153 - 423
Target Start/End: Original strand, 5830769 - 5831033
Alignment:
| Q |
153 |
tttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaagaaaccatctttca |
252 |
Q |
| |
|
||||||||||||| |||||| ||||||| || ||||||| | ||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5830769 |
tttaaacctttcaaggaataatctcacaggaatcattcctagcaacattggtcatatggaaaggttagaatcactcgacttgtcaagaaaccatctttct |
5830868 |
T |
|
| Q |
253 |
ggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccactaagcactcaactac |
352 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5830869 |
ggtagaatgccaacgagcttttcaaatttgacatttcttaataacatgaacttgtctttcaataacttagacggcaaaattccagtaagcactcaactac |
5830968 |
T |
|
| Q |
353 |
aatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt |
423 |
Q |
| |
|
|| |||||||| ||| | ||||||| |||| || | |||||||||||| |||||||||||||||| |
|
|
| T |
5830969 |
aaacttttgattcctattcatatgtgggga------ataatcgactttgtggaccaccactcataaatctt |
5831033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 133 - 383
Target Start/End: Original strand, 5761857 - 5762106
Alignment:
| Q |
133 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
232 |
Q |
| |
|
||||| |||| ||||| || ||||||||||||| |||||| ||||||| |||| ||||| | ||||||| |||||||||||| || |||||||||||| |
|
|
| T |
5761857 |
aaactcgtggcattagctgctttaaacctttcatggaataatctcacaggatttattcctagcaacattggtcatatgaaaagtttacaatcactcgact |
5761956 |
T |
|
| Q |
233 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
332 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
5761957 |
tgtcaataaaccatctttcaggtagaatgccaacaagcttttcaaatttgacatttcttagtcacatgaacttgt-tttcaacaacttagaaggcaatat |
5762055 |
T |
|
| Q |
333 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa |
383 |
Q |
| |
|
||| ||||||||||||||||| |||||| ||||| ||||||| ||||| |
|
|
| T |
5762056 |
tcccataagcactcaactacaaacttttggcccctcatcatatgttgggaa |
5762106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 195 - 313
Target Start/End: Complemental strand, 2715531 - 2715409
Alignment:
| Q |
195 |
caacatttgtcatatgaaaatgttggaatcactcgacttgt----caagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttct |
290 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| | ||||||| |||||| ||| |||||||||||||||| | ||||||||||| | |
|
|
| T |
2715531 |
caacatttgtcatatgaaaatgttagaatcgctcgacttatatatcaagaaattatctttattgtagaatgccaacaagctttgctaatttgacattcat |
2715432 |
T |
|
| Q |
291 |
tagttacatgaacttgtctttca |
313 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2715431 |
aagttacatgaacttgtctttca |
2715409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 5881478 - 5881527
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagcttagggattggt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
5881478 |
atgaagataagctcataaccattgggttttatgttagcttggtgattggt |
5881527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 520
Target Start/End: Original strand, 5884186 - 5884243
Alignment:
| Q |
462 |
agatgaagaatgaagataagctcataaccattgggttttatgttagcttagggattggt |
520 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
5884186 |
agatgaaga-tgaagataagctcataacctttgggttttatgttaccttagggcttggt |
5884243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 5762193 - 5762242
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagcttagggattggt |
520 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
5762193 |
atgaagataagctcataacctttgggttttatgttagcttggtgattggt |
5762242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 5831095 - 5831134
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagctt |
510 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5831095 |
atgaagataagctcataacctttgggttttatgttagctt |
5831134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 5854036 - 5854075
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagctt |
510 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5854036 |
atgaagataagctcataacctttgggttttatgttagctt |
5854075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 176; Significance: 2e-94; HSPs: 10)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 133 - 423
Target Start/End: Original strand, 40862 - 41146
Alignment:
| Q |
133 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
232 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| |||||| ||||||| |||| ||||||||||||||| |||||||| ||| || |||||||| |||| |
|
|
| T |
40862 |
aaacttgtggcattagctggtttaaacctttcaaggaataatctcacaggattaattcccaacaacattggtcatatggaaacattagaatcacttgact |
40961 |
T |
|
| Q |
233 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
332 |
Q |
| |
|
||||||||||||||||||| || | ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
40962 |
tgtcaagaaaccatctttctgggagaatgccaccaagcttttcgtatttgacatttcttagttacatgaacttgtcgttcaacaacttagaaggtaaaat |
41061 |
T |
|
| Q |
333 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
41062 |
tccactaagcactcaactacaatcttttgatccctctacatatgtcgggaacagt------ggactttgtggacagccactcataaatctt |
41146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 133 - 375
Target Start/End: Original strand, 30829 - 31071
Alignment:
| Q |
133 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
232 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||| |||||| ||||||| |||||||||| | ||||||| |||||||| ||| || |||||||| |||| |
|
|
| T |
30829 |
aaactcgtggcattagctggtttaaacctttcatggaataatctcacaggattcattcctagcaacattggtcatatggaaagattagaatcactagact |
30928 |
T |
|
| Q |
233 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
332 |
Q |
| |
|
| |||||||| ||| ||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
30929 |
tatcaagaaaacatatttcaggtagaatgccaacgagcttaacaaatttgacatttcttagttacatggacttgtctttcaacaacttagaaggaaaaat |
31028 |
T |
|
| Q |
333 |
tccactaagcactcaactacaatcttttgatccctctgcatat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
31029 |
tccactaagcactcaactacaatcttttgatccatctacatat |
31071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 133 - 376
Target Start/End: Original strand, 20481 - 20724
Alignment:
| Q |
133 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
232 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||| |||||| ||||||| |||||||||| | ||||||| |||||||| ||| ||| |||||||| |||| |
|
|
| T |
20481 |
aaactcgtggcattagctggtttaaacctttcatggaataatctcacaggattcattcctagcaacattggtcatatggaaaggttagaatcacttgact |
20580 |
T |
|
| Q |
233 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
332 |
Q |
| |
|
| |||||||| ||| |||| |||| |||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
20581 |
tctcaagaaatcatatttctggtagaatgccgacgagcttctcaaatttgacatttcttagttacatggacttgtctttcaacaacttagaaggaaaaat |
20680 |
T |
|
| Q |
333 |
tccactaagcactcaactacaatcttttgatccctctgcatatg |
376 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
20681 |
tccactatgcactcaactacaatcttttggtccatctacatatg |
20724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 133 - 383
Target Start/End: Original strand, 13423 - 13672
Alignment:
| Q |
133 |
aaacttgtggtattagttggtttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgact |
232 |
Q |
| |
|
||||| |||| ||||| || ||| ||||||||| |||||| ||||| | |||| ||||| | ||||||| |||||||| ||| || |||||||||||| |
|
|
| T |
13423 |
aaactcgtggcattagctgctttcaacctttcatggaataatctcaaaggatttattcctagcaacattggtcatatggaaagtttacaatcactcgact |
13522 |
T |
|
| Q |
233 |
tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat |
332 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
13523 |
tgtcaagaaaccatctttcaggtagaatgccaacaagcttttcaaatttgacatttcttagtcacatgaacttgt-tttcaacaacttagaaggcaatat |
13621 |
T |
|
| Q |
333 |
tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa |
383 |
Q |
| |
|
||| ||||||||||||||||| |||||| ||||| ||||||| ||||| |
|
|
| T |
13622 |
tcccataagcactcaactacaaacttttggcccctcatcatatgttgggaa |
13672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 153 - 383
Target Start/End: Original strand, 34841 - 35070
Alignment:
| Q |
153 |
tttaaacctttcagggaatattctcacaagattcattcccaacaacatttgtcatatgaaaatgttggaatcactcgacttgtcaagaaaccatctttca |
252 |
Q |
| |
|
||||||||||||| |||||| ||||||| || ||||||| | ||| ||| |||||||| ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34841 |
tttaaacctttcaaggaataatctcacaggaatcattcctagcaaaattggtcatatggaaaggttagaatcactcgacttgtcaagaaaccatctttct |
34940 |
T |
|
| Q |
253 |
ggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattccactaagcactcaactac |
352 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
34941 |
ggtagaatgccaacgagcttttcaaatttgacatctcttaataacatgaacttgtctttcaataacttagacgacaaaattccagtaagcactcaactac |
35040 |
T |
|
| Q |
353 |
aatcttttgatccctctgcatatgtcgggaa |
383 |
Q |
| |
|
|| ||||||| ||| | ||||||| ||||| |
|
|
| T |
35041 |
aa-attttgattcctattcatatgtggggaa |
35070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 41205 - 41254
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagcttagggattggt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
41205 |
atgaagataagctcataaccattgggttttatgttagcttggtgattggt |
41254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 13759 - 13808
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagcttagggattggt |
520 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
13759 |
atgaagataagctcataacctttgggttttatgttagcttggtgattggt |
13808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 20824 - 20872
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagcttagggattgg |
519 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
20824 |
atgaagataagctaataacctttgggttttatgttagcttggggcttgg |
20872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 31172 - 31220
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagcttagggattgg |
519 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
31172 |
atgaagataagctaataacctttgggttttatgttagcttggggcttgg |
31220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 35164 - 35203
Alignment:
| Q |
471 |
atgaagataagctcataaccattgggttttatgttagctt |
510 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35164 |
atgaagataagctcataacatttgggttttatgttagctt |
35203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 32211293 - 32211224
Alignment:
| Q |
27 |
tttctcttgatatctcttattcttttcaaccagagctagacacgttcatgttttctgtcaatattgctca |
96 |
Q |
| |
|
|||||||||||||| |||||||||||| | || ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
32211293 |
tttctcttgatatcacttattcttttcgatcaaagctagaggtattcatgtttcctgtcaatattgctca |
32211224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 26633389 - 26633303
Alignment:
| Q |
31 |
tcttgatatctcttattcttttcaaccagagctagacacgttcatgttttctgtcaatattgctcataacaaatgttgaaataagtg |
117 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| |||| || ||||||||| |||||||||| |||||| | ||||||||||||| |
|
|
| T |
26633389 |
tcttgatatcacttattcttttcgatcagagttagagacattcatgtttcttgtcaatattcttcataaaaggggttgaaataagtg |
26633303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 22985792 - 22985861
Alignment:
| Q |
27 |
tttctcttgatatctcttattcttttcaaccagagctagacacgttcatgttttctgtcaatattgctca |
96 |
Q |
| |
|
|||||||||||||| |||||||||||| | || ||||||| ||||||||| || ||||||||||||| |
|
|
| T |
22985792 |
tttctcttgatatcacttattcttttcgatcaaagctagaggtattcatgtttcctatcaatattgctca |
22985861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 37781172 - 37781103
Alignment:
| Q |
27 |
tttctcttgatatctcttattcttttcaaccagagctagacacgttcatgttttctgtcaatattgctca |
96 |
Q |
| |
|
|||||||||||||| |||||||||||| | || || |||| ||||||||| |||||||||||||||| |
|
|
| T |
37781172 |
tttctcttgatatcacttattcttttcgatcaaagttagaggtattcatgtttcctgtcaatattgctca |
37781103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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