View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_41 (Length: 353)
Name: NF1274_high_41
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 31 - 344
Target Start/End: Complemental strand, 44704584 - 44704271
Alignment:
| Q |
31 |
tatttacaaggattttttgtacaattatcagtcaagattgatgctatgaaaacgagaataacttgtgaatatttttgtcttctctttcaaattgtttctg |
130 |
Q |
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| T |
44704584 |
tatttacaaggattttttgtacaattatcagtcaagattgatgccatgaaaacgagaataacttgtgaatatttttgtcttctctttcaaattgtttctg |
44704485 |
T |
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| Q |
131 |
tacagaatttgtgaaggaagatgtgaagcttcaggttgatagcagtggccgtattgttgtcaagggagaaaggcaagcaagtgagcagaaacgtgttcgt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44704484 |
tacagaatttgtgaaggaagatgtgaagcttcaggttgatagcagtggccgtattgttgtcaagggagaaaggcaagcaagtgagcagaaacgtgttcgt |
44704385 |
T |
|
| Q |
231 |
tttcacctgagttttccagaaccaaatgattctgagattgataacatagccggaaaattcgatgggggaatcctttacgtgactctccccaagcgaattg |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44704384 |
tttcacctgagttttccagaaccaaatgattctgagattgataacatagccggaaaattcgatgggggaatcctttacgtgactctccccaagcgaattg |
44704285 |
T |
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| Q |
331 |
tacaagagaataat |
344 |
Q |
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|||||||||||||| |
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| T |
44704284 |
tacaagagaataat |
44704271 |
T |
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