View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_44 (Length: 347)
Name: NF1274_high_44
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 56 - 343
Target Start/End: Original strand, 43436550 - 43436836
Alignment:
| Q |
56 |
tataagtcacgatgaagtttaaaaggtcttacctcagtgcaagtctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatat |
155 |
Q |
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| T |
43436550 |
tataagtcacg-tgaagtttaaaaggtcttacctcagtgcaagtctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatat |
43436648 |
T |
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| Q |
156 |
ccaggatatggcaaagcaaatctcgcacataactgatatcaaccataatggatatgcactgcgcactggattggttattcgataatgcnnnnnnnngcaa |
255 |
Q |
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| T |
43436649 |
ccaggatatggcaaagcaaatctcgcacataactgatatcaaccataatggatatgcactgcgcactggattggttattcgataatgcaagaaaaagcaa |
43436748 |
T |
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| Q |
256 |
aggataaccagtcgcataacaatgacaaagcgatatggatttatcttagcggatcgaatagaaaccttcctagcaagaggtttccgag |
343 |
Q |
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| T |
43436749 |
aggataaccagtcgcataacaatgacaaagcgatatggatttatcttagaggatcgaatagaaaccttcctagaaagaggttgccgag |
43436836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 66 - 335
Target Start/End: Original strand, 13826556 - 13826825
Alignment:
| Q |
66 |
gatgaagtttaaaaggtcttacctcagtgcaagtctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatg |
165 |
Q |
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| T |
13826556 |
gatgatgtttaaaaggctgtacctcagtgcaagtctgtcgagatatgtttcgcggttgacaggaagccacttagggaattgatccaatatccaggatatg |
13826655 |
T |
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| Q |
166 |
gcaaagcaaatctcgcacataactgatatcaaccataatggatatgcactgcgcactggattggttattcgataatgcnnnnnnnngcaaaggataacca |
265 |
Q |
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| T |
13826656 |
gcaaaccaaatctcgcatataactgataccaaccataatgcatatgcattgcggaccggatttgttaatcgataatgcaagaaaatgcaaaggacaacca |
13826755 |
T |
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| Q |
266 |
gtcgcataacaatgacaaagcgatatggatttatcttagcggatcgaatagaaaccttcctagcaagagg |
335 |
Q |
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| T |
13826756 |
gtcgcagaacaatgaccaatcgataaggatttatcctagatgatggaatagaaaccttcctggaaagagg |
13826825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 43947835 - 43947761
Alignment:
| Q |
252 |
gcaaaggataaccagtcgcataacaatgacaaagcgatatggatttatcttagcggatcgaatagaaaccttcct |
326 |
Q |
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| T |
43947835 |
gcaaaggataaccaattgcagaacaatgaccatgcgatatggaattatcctagaggatggaatagaaaccttcct |
43947761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 326
Target Start/End: Complemental strand, 9477312 - 9477086
Alignment:
| Q |
100 |
ctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatggcaaagcaaatctcgcacataactgatatcaacc |
199 |
Q |
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| T |
9477312 |
ctgtccagatatgtttcacggttcacaggaagccacttggggaactgatccaagatccaagaaaaggcaaaccaaacttcacatataactgatattaacc |
9477213 |
T |
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| Q |
200 |
ataatggatatgcactgcgcactggattggttattcgataatgcnnnnnnnngcaaaggataaccagtcgcataacaatgacaaagcgatatggatttat |
299 |
Q |
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| || | ||| ||| || | || ||||| || ||||| || ||| | ||||||||| || |||| ||||||||| | |||||||||||||| |
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| T |
9477212 |
acaacgcataagcattgggtacgggatttgtaattcggtagtgcaagaaaatgacaaggataacaagccgcagaacaatgaccatacgatatggatttat |
9477113 |
T |
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| Q |
300 |
cttagcggatcgaatagaaaccttcct |
326 |
Q |
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| ||| ||| |||||||||||||||| |
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| T |
9477112 |
cctagaagatggaatagaaaccttcct |
9477086 |
T |
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