View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_high_46 (Length: 344)

Name: NF1274_high_46
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_high_46
NF1274_high_46
[»] chr3 (27 HSPs)
chr3 (10-309)||(19858216-19858515)
chr3 (47-305)||(19943864-19944123)
chr3 (29-299)||(24839668-24839938)
chr3 (28-183)||(19956357-19956512)
chr3 (16-183)||(26647274-26647441)
chr3 (28-182)||(20036293-20036447)
chr3 (29-183)||(20015892-20016046)
chr3 (30-183)||(19832142-19832295)
chr3 (30-177)||(17114992-17115139)
chr3 (74-183)||(19989795-19989904)
chr3 (98-313)||(19853652-19853849)
chr3 (28-183)||(19838666-19838821)
chr3 (60-183)||(19951394-19951517)
chr3 (28-182)||(19849264-19849424)
chr3 (23-181)||(20046395-20046553)
chr3 (23-183)||(19812550-19812716)
chr3 (198-309)||(19971755-19971866)
chr3 (28-183)||(19818827-19818988)
chr3 (107-198)||(26653407-26653498)
chr3 (157-256)||(26652014-26652116)
chr3 (244-300)||(26647154-26647210)
chr3 (244-305)||(19812425-19812486)
chr3 (244-305)||(20016110-20016171)
chr3 (230-305)||(19818702-19818777)
chr3 (245-300)||(20046273-20046328)
chr3 (244-305)||(19838541-19838602)
chr3 (131-180)||(30914919-30914968)
[»] chr5 (3 HSPs)
chr5 (28-183)||(9815307-9815462)
chr5 (30-183)||(26354619-26354772)
chr5 (308-341)||(5178479-5178512)
[»] chr8 (3 HSPs)
chr8 (107-309)||(22689445-22689629)
chr8 (98-214)||(11544312-11544428)
chr8 (131-214)||(11563921-11564004)
[»] chr7 (4 HSPs)
chr7 (16-180)||(12497482-12497645)
chr7 (16-180)||(12521347-12521510)
chr7 (16-86)||(12579769-12579839)
chr7 (16-86)||(12519474-12519544)
[»] chr1 (2 HSPs)
chr1 (128-183)||(1717484-1717539)
chr1 (244-305)||(1717359-1717420)
[»] chr4 (1 HSPs)
chr4 (107-180)||(6398537-6398610)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 19858515 - 19858216
Alignment:
Q  10 aataatatcattaacagtcgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttg 109  Q
    ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||    
T  19858515 aataaaatcatcaatagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatgcttg 19858416  T
Q  110 atcaacatgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattgtacattaacatccaacaccaagggaa 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||    
T  19858415 atcaacatgggttgtggctctaaatttttgaacctttcccaaacccaaacttgaagcaagtaaaagggtgattatacattaacgtccaacaccaatggaa 19858316  T
Q  210 atttatgaggatattttttgaaatcgaccatttgtttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagcgatagtatt 309  Q
    |||||| | || ||||||| || || || |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  19858315 atttataacgacattttttcaattcaacaatttgtttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatt 19858216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 47 - 305
Target Start/End: Complemental strand, 19944123 - 19943864
Alignment:
Q  47 acattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggctgtaaatttttgaaccttt 146  Q
    |||||||||| ||||||||||||||| |||||| |||| || || | | | |||||||  ||||||||| | ||||||||||| ||||||||||||||||    
T  19944123 acattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctccattattgatcaactttggttgtggctgcaaatttttgaaccttt 19944024  T
Q  147 cccaaacccaaacttgaaccaagtaaaagggtgattgtacattaacatccaacaccaaggg-aaatttatgaggatattttttgaaatcgaccatttgtt 245  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||  ||||| |||||||| |||| ||||||| ||||| || |||||||    
T  19944023 cccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaagggaaaatttatcaggacattttttcaaatcaacaatttgtt 19943924  T
Q  246 tcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagcgatag 305  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  19943923 tcttaaacaaactcaaatccttatataagctagccaaaacagcaggtgccaaagccatag 19943864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 29 - 299
Target Start/End: Original strand, 24839668 - 24839938
Alignment:
Q  29 gagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggct 128  Q
    |||||||||| |||| | |||||||||| ||||||||||||||| |||||| |||| || || | | | |||| ||  |||  |||| ||||||||||||    
T  24839668 gagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctcgattattgcccaacttgggttgtggct 24839767  T
Q  129 gtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattgtacattaacatccaacaccaagggaaatttatgaggatatttttt 228  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||  ||||||||||||| |||| |||||||    
T  24839768 gcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccagcataaagggaaatttatcaggaaatttttt 24839867  T
Q  229 gaaatcgaccatttgtttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaag 299  Q
    |||||| || |||   ||||||||||| || ||||| |||||||||| |||||||||||||||||||||||    
T  24839868 gaaatcaacaattgtgttcttaaacaaccttaaatcgttatataagctagccaaaacagcaggtgccaaag 24839938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 19956512 - 19956357
Alignment:
Q  28 cgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggc 127  Q
    ||||||||||| || | |||||||||||||| |||||| ||||||||||||| ||||||| |||||||| |  | ||| || | ||||||||||||||||    
T  19956512 cgagtctaatgccatcctaacattgtcaactatcaagggcttaaccttatgccacctaaacaaaaaagggttcctatggttcaacaacatgggttgtggc 19956413  T
Q  128 tgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  19956412 tgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattg 19956357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 26647441 - 26647274
Alignment:
Q  16 atcattaacagtcgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaac 115  Q
    ||||| ||||| ||| |||| || | |||||||| |||||| |||||||  ||||||||||||| ||||||| || ||||| ||||| || ||||||||     
T  26647441 atcatcaacagccgaatctagtgcccacttaacactgtcaattttcaagatcttaaccttatgccacctaaacaacaaagggtctccttggttgatcaaa 26647342  T
Q  116 atgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
     |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  26647341 ttgggttgtggttgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattg 26647274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 20036293 - 20036447
Alignment:
Q  28 cgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggc 127  Q
    ||||||||||| || | ||||||||||||   |||||| ||||||||||||| ||||||| |||||||| || ||||| || | |||||||||||||||     
T  20036293 cgagtctaatgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagggtccccatggttcaacaacatgggttgtggt 20036392  T
Q  128 tgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgatt 182  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  20036393 tgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgatt 20036447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 20015892 - 20016046
Alignment:
Q  29 gagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggct 128  Q
    |||||||||| || | |||||||||||| |||||| |||| |||||||||| ||||||| || ||||| ||| |||| |||||||||||||||||||| |    
T  20015892 gagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagggtcttcatgattgatcaacatgggttgtggtt 20015991  T
Q  129 gtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
    ||||| |||||||||| ||||| ||||||| ||||||||| |||| |||||||||    
T  20015992 gtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattg 20016046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 19832295 - 19832142
Alignment:
Q  30 agtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggctg 129  Q
    ||||||||| || | |||||||||||| |  ||||||||||||||||||| ||||||| ||||| ||||| || |  || | ||||||||||||||| ||    
T  19832295 agtctaatgccatcctaacattgtcaattaccaaggccttaaccttatgccacctaaacaaaaatggttcccctttgttcaacaacatgggttgtggatg 19832196  T
Q  130 taaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  19832195 taaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattg 19832142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 17115139 - 17114992
Alignment:
Q  30 agtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggctg 129  Q
    |||||||||  | |||||||||||||| ||||| ||||| |||| ||||| ||||||| || ||||| |||||||| ||||||||||||| |||||| ||    
T  17115139 agtctaatgctagcttaacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagggtctccatggttgatcaacatggattgtggttg 17115040  T
Q  130 taaatttttgaacctttcccaaacccaaacttgaaccaagtaaaaggg 177  Q
    ||||||||||||||| ||||| | ||||| ||||||||||||||||||    
T  17115039 taaatttttgaacctctcccacatccaaatttgaaccaagtaaaaggg 17114992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 19989904 - 19989795
Alignment:
Q  74 ttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaa 173  Q
    |||||| ||||||| |||||||| ||| |||  ||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19989904 ttatgccacctaaacaaaaaagggtcttcatagttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa 19989805  T
Q  174 agggtgattg 183  Q
    ||||||||||    
T  19989804 agggtgattg 19989795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 98 - 313
Target Start/End: Complemental strand, 19853849 - 19853652
Alignment:
Q  98 tctccatgcttgatcaacatgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattgtacattaacatcca 197  Q
    |||||||  ||||||||| | ||||||||||| |||||| |||| || ||||| |||||| |||| |||||||||||||||||||| | ||||||||| |    
T  19853849 tctccattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaagcttgtaccaagtaaaagggtgattgcagattaacatcaa 19853750  T
Q  198 acaccaagggaaatttatgaggatattttttgaaatcgaccatttgtttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaa 297  Q
                      ||||| ||||||||||||| || |||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  19853749 ------------------gaggaaattttttgaaatcaacaatttttttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaa 19853668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 19838821 - 19838666
Alignment:
Q  28 cgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggc 127  Q
    ||||||||| | || | ||| |||||||| | ||||||||||||| |||||| ||||||| |||||||| || || || || | |||||| ||||||||     
T  19838821 cgagtctaaagccatcctaatattgtcaattatcaaggccttaactttatgccacctaaacaaaaaagggtccccctggttcaacaacattggttgtggt 19838722  T
Q  128 tgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  19838721 tgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattg 19838666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 19951517 - 19951394
Alignment:
Q  60 tcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggctgtaaatttttgaacctttcccaaacccaaac 159  Q
    |||||| ||||||||||||| ||||||| |||||||| |||||||| || |||  |||||||||||| ||||||||||| ||||| ||||||| |||||     
T  19951517 tcaagggcttaaccttatgccacctaaacaaaaaagggtctccatggtttatcggcatgggttgtggttgtaaatttttaaacctctcccaaatccaaat 19951418  T
Q  160 ttgaaccaagtaaaagggtgattg 183  Q
    ||||||||||||||||||||||||    
T  19951417 ttgaaccaagtaaaagggtgattg 19951394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 19849424 - 19849264
Alignment:
Q  28 cgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggc 127  Q
    ||||||||||| |||| |||||||||||| ||||||||||| |||||||||| | ||||| || ||||| || ||||| ||| ||||||||| |||||||    
T  19849424 cgagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttggtcaacatggtttgtggc 19849325  T
Q  128 tgt------aaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgatt 182  Q
    |||      |||||||||||||| ||||| ||||||| ||||||||| |||||||||||||    
T  19849324 tgtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatt 19849264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 20046553 - 20046395
Alignment:
Q  23 acagtcgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggtt 122  Q
    ||||| |||||||||| |||||||||||| |||| |||||| || | |||||||||| ||||||| || ||||| || |   | ||||||||||||||||    
T  20046553 acagttgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagggtcgctgggattgatcaacatgggtt 20046454  T
Q  123 gtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgat 181  Q
    ||||  |||| |||  |||||| ||||| ||||||||||||||||| ||||||||||||    
T  20046453 gtggtggtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggtgat 20046395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 19812716 - 19812550
Alignment:
Q  23 acagtcgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgg--- 119  Q
    |||| ||||||||| |  ||| |||||||||||| |   ||| || ||||||||||| ||||||| |||||||| || ||||| ||||||||||| |       
T  19812716 acagccgagtctaacgctaacctaacattgtcaattgataagtccgtaaccttatgccacctaaacaaaaaagggtcgccatggttgatcaacatagttt 19812617  T
Q  120 ---gttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
       ||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  19812616 gttgttgtggttgcaaatttttgaacctctcccaaacccaaatttgaaccaagtaaaagggtgattg 19812550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 19971866 - 19971755
Alignment:
Q  198 acaccaagggaaatttatgaggatattttttgaaatcgaccatttgtttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaa 297  Q
    |||| ||||||||||||| |||||||||||| ||||| || |||||||||||||||| | |  |||| |||||||||| |||||||||||  ||||||||    
T  19971866 acacaaagggaaatttatcaggatattttttcaaatcaacaatttgtttcttaaacagagttcaatccttatataagctagccaaaacagttggtgccaa 19971767  T
Q  298 agcgatagtatt 309  Q
    ||| ||||||||    
T  19971766 agcaatagtatt 19971755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 19818988 - 19818827
Alignment:
Q  28 cgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggc 127  Q
    ||||||||||| || | |||||||||||| || |||||||| ||| | |||| ||||||| |||||||| |||||||| || |||||||||| |||||||    
T  19818988 cgagtctaatgccatcctaacattgtcaatttccaaggcctgaacatcatgccacctaaacaaaaaagggtctccatggtttatcaacatggtttgtggc 19818889  T
Q  128 ------tgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
          || | |||||||||||| ||||| ||||| | ||||||||| ||||||||||||||    
T  19818888 agtggttgcatatttttgaacctctcccacacccatatttgaaccaaataaaagggtgattg 19818827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 26653498 - 26653407
Alignment:
Q  107 ttgatcaacatgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattgtacattaacatccaa 198  Q
    ||||||||| |||||||||| || |||||| ||||||| ||||| ||||||| |||||||||||||||||||||| ||| |||||| |||||    
T  26653498 ttgatcaacttgggttgtggttgcaaatttgtgaacctctcccacacccaaatttgaaccaagtaaaagggtgatcgtagattaacttccaa 26653407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 26652116 - 26652014
Alignment:
Q  157 aacttgaaccaagtaaaagggtgattgta---cattaacatccaacaccaagggaaatttatgaggatattttttgaaatcgaccatttgtttcttaaac 253  Q
    |||||||||||||||||||||||||||||   ||||||| ||||||| ||||| |||||||| |||| ||||||| ||||| || | |  ||||||||||    
T  26652116 aacttgaaccaagtaaaagggtgattgtagtacattaacctccaacaacaaggaaaatttatcaggacattttttcaaatcaacaagtgttttcttaaac 26652017  T
Q  254 aaa 256  Q
    |||    
T  26652016 aaa 26652014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 26647210 - 26647154
Alignment:
Q  244 tttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagc 300  Q
    ||||||||||||||| ||||| |||||||||| ||| |||||||| |||||||||||    
T  26647210 tttcttaaacaaacttaaatccttatataagctagctaaaacagccggtgccaaagc 26647154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 19812486 - 19812425
Alignment:
Q  244 tttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagcgatag 305  Q
    ||||||||||||||| ||||| ||||||| || |||||| ||||| ||||||||||| ||||    
T  19812486 tttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaatag 19812425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 20016110 - 20016171
Alignment:
Q  244 tttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagcgatag 305  Q
    ||||||||||||||| ||||| ||||||| || |||||| ||||| ||||||||||| ||||    
T  20016110 tttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaatag 20016171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 19818777 - 19818702
Alignment:
Q  230 aaatcgaccatttgtttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagcgatag 305  Q
    ||||| || |||| ||||||||||||||| ||||| ||||| | |  |||||||||||| ||||||||||| ||||    
T  19818777 aaatcaactatttttttcttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaatag 19818702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 20046328 - 20046273
Alignment:
Q  245 ttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagc 300  Q
    |||||||| ||||| ||||| ||||||| || | ||||||||||||||||||||||    
T  20046328 ttcttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagc 20046273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 19838602 - 19838541
Alignment:
Q  244 tttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagcgatag 305  Q
    |||||| |||||| | ||||||||||||| || ||| |||||||| ||||||||||| ||||    
T  19838602 tttctttaacaaagttaaatcattatatatgctagctaaaacagctggtgccaaagcaatag 19838541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 30914968 - 30914919
Alignment:
Q  131 aaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtga 180  Q
    |||||||| ||||| ||||||||||||| ||| ||||||| |||||||||    
T  30914968 aaattttttaacctctcccaaacccaaatttgtaccaagtcaaagggtga 30914919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 9815462 - 9815307
Alignment:
Q  28 cgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggc 127  Q
    ||||||||||| || |||||||||||||| ||||||||||| |||||||||  ||||||| || ||||| ||||| || |||||||||||||||| ||||    
T  9815462 cgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattgatcaacatgggttctggc 9815363  T
Q  128 tgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
    |||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||    
T  9815362 tgtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattg 9815307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 26354619 - 26354772
Alignment:
Q  30 agtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaacatgggttgtggctg 129  Q
    ||||||||  || |||||||||||||| ||||||||| |  ||| ||||| | ||||| || ||||| |||||| | ||||||||||||||||| || ||    
T  26354619 agtctaattccagcttaacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttg 26354718  T
Q  130 taaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
    ||| ||||||||||| ||||| ||||||| ||||||||||||||| ||||||||    
T  26354719 taattttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattg 26354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 5178479 - 5178512
Alignment:
Q  308 ttaccttgctttccttttctagcttggccctctt 341  Q
    ||||||||||||||||||||||||||||||||||    
T  5178479 ttaccttgctttccttttctagcttggccctctt 5178512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 107 - 309
Target Start/End: Original strand, 22689445 - 22689629
Alignment:
Q  107 ttgatcaacatgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattgtacattaacatccaacaccaagg 206  Q
    ||||||||||||||  |||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||          
T  22689445 ttgatcaacatgggccgtggttgcaaatttttgaacctctcccacacccaaacttgaaccaagtaaaagggtgattgcagattaacatc-aaca------ 22689537  T
Q  207 gaaatttatgaggatattttttgaaatcgaccatttgtttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagcgatagt 306  Q
               ||| ||||||||||||| || |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||    
T  22689538 -----------ggacattttttgaaatcaacaatttgtttcttaaacaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagt 22689626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 11544428 - 11544312
Alignment:
Q  98 tctccatgcttgatcaacatgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattgtacattaacatcca 197  Q
    |||||||  ||||||||| |||||| ||| || |||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||| ||||    
T  11544428 tctccattgttgatcaacttgggttttggttgcaaatttttgaacctctcccaaacccaaacttgaaccaagtaaatgggtgattgcacatcaacctcca 11544329  T
Q  198 acaccaagggaaattta 214  Q
    ||  ||| |||||||||    
T  11544328 acttcaatggaaattta 11544312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 11563921 - 11564004
Alignment:
Q  131 aaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattgtacattaacatccaacaccaagggaaattta 214  Q
    |||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||||||| |||| |  ||| |||||||||    
T  11563921 aaatttttgaacctctcccaaagccaaactttaaccaagtaaatgggtgattgtacattaacctccaccttcaatggaaattta 11564004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 12497645 - 12497482
Alignment:
Q  16 atcattaacagtcgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaac 115  Q
    |||||| ||||| ||| ||||||   ||||||||||| ||| ||||||||||  |||||||||| |||| || || ||| |||||   || |||||||||    
T  12497645 atcattgacagttgagcctaatgcacacttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaac 12497546  T
Q  116 atgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtga 180  Q
    ||| ||||||| || || |||  || ||| |||| ||||||||| |||||||||||||| |||||    
T  12497545 atgagttgtggttgcaagtttgcgagcctctccc-aacccaaacatgaaccaagtaaaaaggtga 12497482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 12521510 - 12521347
Alignment:
Q  16 atcattaacagtcgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaaagaaaaaaggttctccatgcttgatcaac 115  Q
    |||||| ||||| ||| ||||||   ||||||||||| ||| ||||||||||  |||||||||| |||| || || ||| |||||   || |||||||||    
T  12521510 atcattgacagttgagcctaatgcacacttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaac 12521411  T
Q  116 atgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtga 180  Q
    ||| ||||||| || || |||  || ||| |||| ||||||||| |||||||||||||| |||||    
T  12521410 atgagttgtggttgcaagtttgcgagcctctccc-aacccaaacatgaaccaagtaaaaaggtga 12521347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 12579769 - 12579839
Alignment:
Q  16 atcattaacagtcgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaa 86  Q
    |||||||||| | ||||||||||  |||||||||||||||| || |||||||| |||||||| | ||||||    
T  12579769 atcattaacacttgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaa 12579839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 12519474 - 12519544
Alignment:
Q  16 atcattaacagtcgagtctaatgtcaacttaacattgtcaactttcaaggccttaaccttatgcgacctaa 86  Q
    |||||| ||| | ||||||||||  |||||||||||||||| || |||||||| |||||||| | ||||||    
T  12519474 atcattgacacttgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaa 12519544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 1717539 - 1717484
Alignment:
Q  128 tgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtgattg 183  Q
    |||||| ||||||||||| || | ||||||| ||||||||||||||||||||||||    
T  1717539 tgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattg 1717484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 1717420 - 1717359
Alignment:
Q  244 tttcttaaacaaactcaaatcattatataagcaagccaaaacagcaggtgccaaagcgatag 305  Q
    ||||||||||||| | ||||| ||||||| || ||| |||||||| ||||||||||| ||||    
T  1717420 tttcttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaatag 1717359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 6398610 - 6398537
Alignment:
Q  107 ttgatcaacatgggttgtggctgtaaatttttgaacctttcccaaacccaaacttgaaccaagtaaaagggtga 180  Q
    |||||||||||| ||||||| || || ||| ||||||| ||||| ||| |||||||||||| |||||| |||||    
T  6398610 ttgatcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtga 6398537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University