View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_6 (Length: 771)
Name: NF1274_high_6
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 178 - 617
Target Start/End: Complemental strand, 13168218 - 13167779
Alignment:
| Q |
178 |
ggtagaataaagattttgtgagtgtgtgagaaatttatatttggaatagcaaccatttgcaagaataatccatgggatagcctaaggtcccttttttcag |
277 |
Q |
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| T |
13168218 |
ggtagaataaatattttgtgagtgtgtgagaaatttatatttggaatagcaaccatttgcaagaataatccatgggatagcctaaggtcccttttttcag |
13168119 |
T |
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| Q |
278 |
gacatcaaatatttgtgatgttgcttagtagtatataaaaatgaacattttatattttggtgacccaatttcattgataaacaaccttgagaatctacta |
377 |
Q |
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| T |
13168118 |
gacatcaaatatttgtgatgttgcttagtagtatataaaaatgaacattttatattttggtgacccaatttcattgataaacaaccttgagaatctacta |
13168019 |
T |
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| Q |
378 |
aattatacatttatgttctcaaaacatggaataaacttagaagtaatttacgagatagattattgaaaagcgtccctaaaagagatatgtttattgtgac |
477 |
Q |
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| T |
13168018 |
aattatacatttatgttctcaaaacatggaataaacttagaagtaatttacgatatagattattgataagtgtccctaaaagagatatgtttattgtgac |
13167919 |
T |
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| Q |
478 |
tgtgagtggtcctaatgannnnnnnaatagccacttcacatcatacattcattattttttaatggggaagaggaagatagacatctacttgtttatttag |
577 |
Q |
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| T |
13167918 |
tgtgagtggtcgtaatgatttttttaatagccacttcacatcatacattcattattttttaatggggaagaggaagatagacatttacttgtttatttag |
13167819 |
T |
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| Q |
578 |
aagaattgatcgaaagagtttcttgggttcacattagaag |
617 |
Q |
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| T |
13167818 |
aagaattgatcgaaagagtttcttgggttcacattagaag |
13167779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 634 - 756
Target Start/End: Complemental strand, 13167753 - 13167630
Alignment:
| Q |
634 |
aacgagggccatt-agaaggttgaaattatattaaacctatgccctaatccagctcatgcctaagttaattcactaatgtaaacagaacttacagctgca |
732 |
Q |
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| T |
13167753 |
aacgagggccatttagaaggttgaaattatattaaacctatgccctaatccagctcatgcctaagttaattcactaatgtaaacagaacttacagctgca |
13167654 |
T |
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| Q |
733 |
cgtatataatattatattcttgga |
756 |
Q |
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| T |
13167653 |
catatataatattattttcttgga |
13167630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 13168360 - 13168276
Alignment:
| Q |
30 |
gaggataggtgagcatggttgagatggatgataaacgagtctttcttggtcacatacatataatattgtcttagacatactaatg |
114 |
Q |
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| T |
13168360 |
gaggataggtgagcatggttgagatggatgataaacgagtctttcttggtcacatacatataatattgtcttagacatactaatg |
13168276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 642 - 756
Target Start/End: Complemental strand, 12850290 - 12850175
Alignment:
| Q |
642 |
ccattagaaggttgaaatt-atattaaacctatgccctaatccagctcatgcctaagttaattcactaatgtaaacagaacttacagctgcacgtatata |
740 |
Q |
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| T |
12850290 |
ccattagaaggttgaaatttatgtaaaacctatgacctaatccagctcatgcctaagttaattcactactgtaaacagaacttacagctgcacatatata |
12850191 |
T |
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| Q |
741 |
atattatattcttgga |
756 |
Q |
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| T |
12850190 |
atattattttcttgga |
12850175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 326 - 469
Target Start/End: Complemental strand, 12850540 - 12850397
Alignment:
| Q |
326 |
tttatattttggtgacccaatttcattgataaacaaccttgagaatctactaaattatacatttatgttctcaaaacatgga--ataaacttagaagtaa |
423 |
Q |
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| T |
12850540 |
tttatattttggtgacc-aatttctttgatgaacaaccttgagaatccactaaattataaatttatgttctgaaaacttggaatataaacttagaagtaa |
12850442 |
T |
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| Q |
424 |
tttacgagatagattattgaaaagcgtccctaaaagagatatgttt |
469 |
Q |
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| T |
12850441 |
-ttacgagataaattattgaagagtgtctttaaaagagatatgttt |
12850397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 534 - 617
Target Start/End: Complemental strand, 12850399 - 12850317
Alignment:
| Q |
534 |
ttttaatggggaagaggaagatagacatctacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
617 |
Q |
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| T |
12850399 |
ttttaacggggatgaggaagataaactt-tgcttgtttatttagaagaattgatcaaaagagtttcatgtatttacattagaag |
12850317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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