View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_64 (Length: 273)
Name: NF1274_high_64
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_64 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 2685606 - 2685372
Alignment:
| Q |
10 |
aagaatatttcatcttctaaactcaaatgtgaggcctcaagaagctctatgatatctttagcattactagagaatttgttgtccatcacatctaagaagt |
109 |
Q |
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| T |
2685606 |
aagattatttcatcttctaaacccaaatgtgaggcctcaagaagctctataatatctttagcattactagagaatttattgtccatcacatctaagaagt |
2685507 |
T |
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| Q |
110 |
tgcttagtatatctgaatttcatgaataaataacaaccnnnnnnnnnnnnnttagttcctaggttttgataaatttgatgaatatctaattaaaatagat |
209 |
Q |
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| T |
2685506 |
tgcttagtatatctgaatttcatgaataaataacaaccaaaaaaccaaaaattagttcctaggttttgataaatttgatgaatatctaattaaaatagat |
2685407 |
T |
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| Q |
210 |
agttaccagatggaaacacattgtatccatgttgc |
244 |
Q |
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| T |
2685406 |
agttaccagatggaaaaacattgtatccatgttgc |
2685372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 2680340 - 2680128
Alignment:
| Q |
17 |
tttcatcttctaaactcaaatgtgaggcctcaagaagctctatgatatctttagcattactagagaatttgttgtccatcacatctaagaagttgcttag |
116 |
Q |
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||||||||||||| | ||||||||||||||||| ||||||||| | || |||||||| |||||||||| ||||||| || |||||||||||||||||||| |
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| T |
2680340 |
tttcatcttctaagcccaaatgtgaggcctcaacaagctctataaaatatttagcatcactagagaatctgttgtctataacatctaagaagttgcttag |
2680241 |
T |
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| Q |
117 |
tatatctgaatttcatgaataaataacaaccnnnnnnnnnnnnnttagttcctaggttttgataaatttgatgaatatctaattaaaatagatagttacc |
216 |
Q |
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| T |
2680240 |
tatatctgaatttcatg----aatgacaac--------gaaaaattagttcctaggttgtgataaatttgatgaatatctaattaaaatagatagttacc |
2680153 |
T |
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| Q |
217 |
agatggaaacacattgtatccatgt |
241 |
Q |
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| T |
2680152 |
agatggaaaaacattgtatccatgt |
2680128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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