View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_high_66 (Length: 265)

Name: NF1274_high_66
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_high_66
NF1274_high_66
[»] chr3 (8 HSPs)
chr3 (129-252)||(45901078-45901201)
chr3 (1-80)||(45901201-45901279)
chr3 (186-233)||(46478491-46478538)
chr3 (171-225)||(46490241-46490295)
chr3 (124-244)||(4582302-4582422)
chr3 (189-245)||(47398183-47398239)
chr3 (135-240)||(46469884-46469989)
chr3 (149-245)||(5155457-5155553)
[»] chr4 (2 HSPs)
chr4 (185-252)||(37147594-37147661)
chr4 (197-252)||(15555252-15555307)
[»] chr7 (4 HSPs)
chr7 (148-245)||(16729594-16729691)
chr7 (148-245)||(17706666-17706763)
chr7 (165-245)||(17716654-17716734)
chr7 (194-245)||(17734705-17734756)
[»] chr8 (2 HSPs)
chr8 (189-245)||(21465808-21465864)
chr8 (149-220)||(9677465-9677536)
[»] chr2 (3 HSPs)
chr2 (192-243)||(20143701-20143752)
chr2 (192-243)||(20169758-20169809)
chr2 (167-233)||(33293523-33293589)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 45901201 - 45901078
Alignment:
Q  129 aacattcataccttcttccggaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45901201 aacattcataccttcttccggaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgat 45901102  T
Q  229 caaccaacacaccattggcaacag 252  Q
    ||||||||||||||||||||||||    
T  45901101 caaccaacacaccattggcaacag 45901078  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 45901279 - 45901201
Alignment:
Q  1 tggtaaatataataaaactattatttgtttgtacgatagattgactagttagttagtttattaacggaaaataaaaaaca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45901279 tggtaaatataataaaactattatttgtttgtacgatagattga-tagttagttagtttattaacggaaaataaaaaaca 45901201  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 46478538 - 46478491
Alignment:
Q  186 gacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaacc 233  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  46478538 gacacgatttgttggaaggaaggttgaagagaaagggtttgatcaacc 46478491  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 46490295 - 46490241
Alignment:
Q  171 gctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgttt 225  Q
    |||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  46490295 gctttataatcattagacacaatttgtttgaaggaaggttgaagagaaagggttt 46490241  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 4582302 - 4582422
Alignment:
Q  124 gatataacattcataccttcttccggaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgt 223  Q
    ||||||| || |||||||| |||  |||||||||| ||  ||  ||||| ||| |||| ||||| || |||||||||||||||||||| |||||| |  |    
T  4582302 gatataaaatacataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaacggct 4582401  T
Q  224 ttgatcaaccaacacaccatt 244  Q
    |||||||||| |||| |||||    
T  4582402 ttgatcaacccacactccatt 4582422  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 47398183 - 47398239
Alignment:
Q  189 acaatttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattg 245  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||| |||| ||||||    
T  47398183 acaatttgtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattg 47398239  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 46469989 - 46469884
Alignment:
Q  135 cataccttcttccggaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaacca 234  Q
    |||||||| ||| ||||||||||  || ||| |||||||||| ||||  ||  ||   ||| || ||||||||||||||||||||| ||||||||||||     
T  46469989 cataccttgttctggaaatcaacggaagccaaagtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggtttgatcaaccc 46469890  T
Q  235 acacac 240  Q
    ||||||    
T  46469889 acacac 46469884  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 5155553 - 5155457
Alignment:
Q  149 gaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattg 245  Q
    |||||||||| ||| || |||||| ||| ||||    ||||| |||| || ||||||||||||||||||||| ||||| |||||| | |||||||||    
T  5155553 gaaatcaacagaaagcaaagtggccttataatcagaggacacgatttctttgaaggaaggttgaagagaaagggtttgttcaacccatacaccattg 5155457  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 37147661 - 37147594
Alignment:
Q  185 agacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattggcaacag 252  Q
    |||||||||||||| ||||||| ||||||||||||||| ||| |||| | ||||||||||||| ||||    
T  37147661 agacacaatttgtttgaaggaatgttgaagagaaagtgattgttcaatccacacaccattggctacag 37147594  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 15555307 - 15555252
Alignment:
Q  197 ttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattggcaacag 252  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||||||||||| ||||    
T  15555307 ttggaaggaagtttgaagagaaagggtttgctcaacccacacaccattggcgacag 15555252  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 16729691 - 16729594
Alignment:
Q  148 ggaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattg 245  Q
    |||||||||| | | | ||||| |||||||||||  ||| || || |||||  |||||||||||||||| ||||| ||| |||||| |||||||||||    
T  16729691 ggaaatcaacttcagcaagagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccattg 16729594  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 17706763 - 17706666
Alignment:
Q  148 ggaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattg 245  Q
    |||||||||| | | | ||||| |||||||||||  ||| || || |||||  |||||||||||||||| ||||| ||| |||||| |||||||||||    
T  17706763 ggaaatcaacttcagcaagagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccattg 17706666  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 17716734 - 17716654
Alignment:
Q  165 agagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattg 245  Q
    ||||| |||||||||||  ||| || || |||||  |||||||||||||||| ||||| ||| |||||| |||||||||||    
T  17716734 agagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccattg 17716654  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 17734756 - 17734705
Alignment:
Q  194 ttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattg 245  Q
    ||||| ||||||||||||||||| ||||| ||| |||||| |||||||||||    
T  17734756 ttgtttgaaggaaggttgaagaggaagtgattgttcaacccacacaccattg 17734705  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 21465808 - 21465864
Alignment:
Q  189 acaatttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattg 245  Q
    ||||||| | |||||||||||||||||||||||| ||| |||||| ||| |||||||    
T  21465808 acaatttttcggaaggaaggttgaagagaaagtgattgttcaacccacataccattg 21465864  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 9677465 - 9677536
Alignment:
Q  149 gaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaag 220  Q
    |||||||||| || | |||||||| ||| ||||| ||||||   ||| ||||||||||||||||||||||||    
T  9677465 gaaatcaacagaagcgagagtggccttataatcggtagacatggtttcttggaaggaaggttgaagagaaag 9677536  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 20143752 - 20143701
Alignment:
Q  192 atttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccat 243  Q
    ||||||| ||||||||||||||||||||| ||||| |||||| | |||||||    
T  20143752 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 20143701  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 20169758 - 20169809
Alignment:
Q  192 atttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccat 243  Q
    ||||||| ||||||||||||||||||||| ||||| |||||| | |||||||    
T  20169758 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 20169809  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 33293589 - 33293523
Alignment:
Q  167 agtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaacc 233  Q
    ||||||||| |||||  ||| |||||||| | |||||||| ||||||||||||| | ||||||||||    
T  33293589 agtggctttgaaatcagtagccacaatttctaggaaggaatgttgaagagaaagggattgatcaacc 33293523  T

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