View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_high_73 (Length: 252)

Name: NF1274_high_73
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_high_73
NF1274_high_73
[»] chr2 (5 HSPs)
chr2 (30-161)||(41569673-41569804)
chr2 (30-127)||(41555984-41556081)
chr2 (158-242)||(41569842-41569926)
chr2 (177-233)||(41556155-41556211)
chr2 (168-233)||(41588797-41588862)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 41569673 - 41569804
Alignment:
Q  30 attggacacggttcatacattagtatacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatcaa 129  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41569673 attggacacggttgatacattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatcaa 41569772  T
Q  130 caatattcttcgacatcaaatccattcattgt 161  Q
    ||||||||||  ||||||||||||||||||||    
T  41569773 caatattcttttacatcaaatccattcattgt 41569804  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 41555984 - 41556081
Alignment:
Q  30 attggacacggttcatacattagtatacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatc 127  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41555984 attggacacggttgatacattagtacacaccaaatcttctgaatttagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatc 41556081  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 41569842 - 41569926
Alignment:
Q  158 ttgttataatttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcccatattctt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  41569842 ttgttataatttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagtgagagtgaattctcttcccctattctt 41569926  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 41556155 - 41556211
Alignment:
Q  177 atggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcc 233  Q
    |||||||||||| |||||| | ||||||||||||| || ||||||||||||||||||    
T  41556155 atggacaaaagagttgttggtccacaccatgaacatagtgagagtgaattctcttcc 41556211  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 41588797 - 41588862
Alignment:
Q  168 ttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcc 233  Q
    ||||| || ||||||||| || |||||||| ||| ||||||||||||  ||||||||||| |||||    
T  41588797 ttgttatagatggacaaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttcc 41588862  T

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