View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_74 (Length: 252)
Name: NF1274_high_74
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_74 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 41569673 - 41569804
Alignment:
| Q |
30 |
attggacacggttcatacattagtatacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatcaa |
129 |
Q |
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| T |
41569673 |
attggacacggttgatacattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatcaa |
41569772 |
T |
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| Q |
130 |
caatattcttttacatcaaatccattcattgt |
161 |
Q |
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| T |
41569773 |
caatattcttttacatcaaatccattcattgt |
41569804 |
T |
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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 41555984 - 41556081
Alignment:
| Q |
30 |
attggacacggttcatacattagtatacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatc |
127 |
Q |
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| T |
41555984 |
attggacacggttgatacattagtacacaccaaatcttctgaatttagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatc |
41556081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 41569842 - 41569926
Alignment:
| Q |
158 |
ttgttataatttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcccatattctt |
242 |
Q |
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| T |
41569842 |
ttgttataatttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagtgagagtgaattctcttcccctattctt |
41569926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 41556155 - 41556211
Alignment:
| Q |
177 |
atggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcc |
233 |
Q |
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| T |
41556155 |
atggacaaaagagttgttggtccacaccatgaacatagtgagagtgaattctcttcc |
41556211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 41588797 - 41588862
Alignment:
| Q |
168 |
ttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcc |
233 |
Q |
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| T |
41588797 |
ttgttatagatggacaaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttcc |
41588862 |
T |
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