View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_high_79 (Length: 251)
Name: NF1274_high_79
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_high_79 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 30367131 - 30367004
Alignment:
| Q |
30 |
aaaactaaggtgaaatggtcattgaaatttgacagatgacgcaacaccgacagtagcataccaactattggccatttcggcataatttcaccgccattgt |
129 |
Q |
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| T |
30367131 |
aaaactaaggtgaaatggtcattgaaatttgacagatgacgcaacaccgacaatagcataccaactattggccaattcggcataatctcaccgccattgt |
30367032 |
T |
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| Q |
130 |
gtcgccaatagtagaagtaaatgaagaa |
157 |
Q |
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| T |
30367031 |
gtcgcctatagtagatgtaaatgaagaa |
30367004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 31376664 - 31376787
Alignment:
| Q |
30 |
aaaactaaggtgaaatggtcattgaaatttgacagatgacgcaacaccgacagtagcataccaactattggccatttcggcataatttcaccgccattgt |
129 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| |
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| T |
31376664 |
aaaactaaggtgacatggttattgaaatttgacagatgacgcaacaccgacagtagcataccaactattggccaattcatcataatctcaccgccattgt |
31376763 |
T |
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| Q |
130 |
gtcgccaatagtagaagtaaatga |
153 |
Q |
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| T |
31376764 |
gtcgccaatagtagatgtaaatga |
31376787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 31397856 - 31397810
Alignment:
| Q |
163 |
tggcaggtagagcagtctaatttttctaacgaaccttactgatgtag |
209 |
Q |
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| T |
31397856 |
tggcaggtagagcagtctaatttttggaaccaacctgactgatgtag |
31397810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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