View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_high_8 (Length: 682)

Name: NF1274_high_8
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_high_8
NF1274_high_8
[»] chr2 (1 HSPs)
chr2 (13-654)||(8920777-8921423)


Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 13 - 654
Target Start/End: Original strand, 8920777 - 8921423
Alignment:
Q  13 aatatgctgaaagaaatattccaatttcctatgcaaaaatgacaaactcaaaatcattannnnnnnnatgttagttgttatgttatgttaatatttttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| ||||||||||||||     ||||||||||    
T  8920777 aatatgctgaaagaaatattccaatttcctatgcaaaaatgacaaactcaaaatcattgctatttttatgatagttgttatgtta-----atatttttct 8920871  T
Q  113 actttatttgtatttgaattctaaacttttacttcttacctcctttaatcttttagttcaaccaactaaattaatcatccctggaacaattgttttgttg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8920872 actttatttgtatttgaattctaaacttttacttcttacctcctttaatcttttagttcaacgaactaaattaatcatccctggaacaattgttttgttg 8920971  T
Q  213 gcatgacattggaaaagaaaaagagtgagaaaattaattaagttttgcgttgctatatatgaattaat-------------aacaggttatttatgctgt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||             |||||||||||||||||||    
T  8920972 gcatgacattggaaaagaaaaagagtgagaaaattaattaaggcatgcgtagctatatatgaattaatcataatttagagcaacaggttatttatgctgt 8921071  T
Q  300 gaccttatttatcaaggcgattgaggtaaaataggtgagacatgcattacaccttgctgaattaaaggtaatgtatccctaatgacaagtataattcaat 399  Q
    ||||||||    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  8921072 gaccttat----caaggcgattgaggtaaaataggtgagatatgcattacaccttgatgaattaaaggtaatgtatctctaatgacaagtataattcaat 8921167  T
Q  400 tcttaaacgaatgagatagtgatcacaagtactctaaaatctctcggttaactatttaattacctccactaattatctctctccacttcaagagacacaa 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8921168 tcttaaacgaatgagatagtgatcacaagtactctaaaatctctcggttaactatttaattacctccactaattatctctctccacttcatgagacacaa 8921267  T
Q  500 tctggcgcaggcactatagaaagcaacactgcatgtgagtaaagacctaaagttgaatgaatctaatccccgtc-aactctacatgccccatacaccttt 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  8921268 tctggcgcaggcactatagaaagcaacactgcatgtgagtaaagacctaaagttgaatgaatctaatccccgtcaaactctgcatgccccatacaccttt 8921367  T
Q  599 gttttagctagtagacaataaacaattactaaagtgtatatatccacattgttatt 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8921368 gttttagctagtagacaataaacaattactaaagtgtatatatccacattgttatt 8921423  T

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