View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_1 (Length: 824)
Name: NF1274_low_1
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 237 - 729
Target Start/End: Original strand, 9451879 - 9452368
Alignment:
| Q |
237 |
tgttcttctcaatgcatgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaattttt |
336 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451879 |
tgttcttctcaattcatgttattctcctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaattttt |
9451978 |
T |
|
| Q |
337 |
-cttccgttgccatgccttttccacatagctatataaattgttctgtcggaagagatgttttgccgttaccatgccttttaccgtaatttttctgtcgtt |
435 |
Q |
| |
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|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||| |
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| T |
9451979 |
tctgatgttgccatgccttttccagatagctatataaattgttctgtcataagagatgttttgccattgccatgccttttaccgtaatttttctgtagtt |
9452078 |
T |
|
| Q |
436 |
gccatgccttttccagatatcattgccttaaagggtagtacatgattgaaatgtgaaaagtaaataaaaaaggaatttgatagagcaatgttctgaacat |
535 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |
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| T |
9452079 |
gccatgccttttccagatatcattgccttaaaggttagtacatgattgaaatgtgaaaaggaaataaaaaaagattttgatagagcaatgttctgaaca- |
9452177 |
T |
|
| Q |
536 |
ttttttctcgaattactaattattattacattagcatcttatagtgnnnnnnnnnnncttttcataaaggcaaacaaggatgatgaatatcccgccgatt |
635 |
Q |
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|||||||| |||||||||||||||||||| | ||||| | |||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
9452178 |
ttttttcttgaattactaattattattac---tgtgtcttagtatctttttttttttgttttcataaatgcagacaaggatgatgaatatcccgccgatt |
9452274 |
T |
|
| Q |
636 |
ttaaggtctgttacacaaccttcaaagatggtgcacgtcaaaattgaacctaaggaatagagttgcatgtgctgttgttgacaaggagcatcta |
729 |
Q |
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||||||| |||| | || | ||||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||| | ||||||||| |
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| T |
9452275 |
ttaaggtttgttgcgcatcattcaaagatggtgaacgtcaaaattgaacctaaggaatagagttgaacatgttgttgttgacgaagagcatcta |
9452368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-132; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 400 - 729
Target Start/End: Complemental strand, 21547436 - 21547109
Alignment:
| Q |
400 |
cgttaccatgccttttaccgtaatttttctgtcgttgccatgccttttccagatatcattgccttaaagggtagtacatgattgaaatgtgaaaagtaaa |
499 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |
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| T |
21547436 |
cgttgccatgccttttaccgtaatttttctgtcgttgccatgccttttccagatatcattcccttaaagggttgtacatgattgaaatgtg-aaagtaaa |
21547338 |
T |
|
| Q |
500 |
taaaaaaggaatttgatagagcaatgttctgaacatttttttctcgaattactaattattattacattagcatcttatagtgnnnnnnnnnnncttttca |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| |
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| T |
21547337 |
taaaaaaggaatttgatagagcaatgttctgaacatttttttcttgaattactaattattattactgtagtgtcttatagtg-ttttttttttcttttca |
21547239 |
T |
|
| Q |
600 |
taaaggcaaacaaggatgatgaatatcccgccgattttaaggtctgttacacaaccttcaaagatggtgcacgtcaaaattgaacctaaggaatagagtt |
699 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21547238 |
taaaggcaaacaaggatgatgaatatcctgccgattttaaggtctgttacacaaccttcaaagatggtgcacgtcaaaattgaacctaaggattagagtt |
21547139 |
T |
|
| Q |
700 |
gcatgtgctgttgttgacaaggagcatcta |
729 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
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| T |
21547138 |
gcatgtgctgttgttgacgaggagcatcta |
21547109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 152 - 392
Target Start/End: Complemental strand, 21548078 - 21547833
Alignment:
| Q |
152 |
aaaaattagggttcttggcctcccttcacaagcatcaagatggagctaaagattaactcttgacagcaaggtatatcaggcagtatgttcttctcaatgc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21548078 |
aaaaattagggttcttggcctcccttcacaagcatcaagatggagttaaagattaactcttgacagcaaggtatatcaggcagtatgttcttctcaatgc |
21547979 |
T |
|
| Q |
252 |
atgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaatttttcttccgttgcca--- |
348 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21547978 |
atgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaatttttcttccgttgccatgc |
21547879 |
T |
|
| Q |
349 |
--tgccttttccacatagctatataaattgttctgtcggaagagat |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21547878 |
catgccttttccacatagctatataaattgttctgtcggaagagat |
21547833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 387 - 447
Target Start/End: Complemental strand, 21547481 - 21547421
Alignment:
| Q |
387 |
agagatgttttgccgttaccatgccttttaccgtaatttttctgtcgttgccatgcctttt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21547481 |
agagatgttttgccgttaccatgccttttaccgtaatttttctgtcgttgccatgcctttt |
21547421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 21548319 - 21548273
Alignment:
| Q |
104 |
ggtttctctcttctgtctctcaatttatcattatggtctttctctca |
150 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21548319 |
ggtttctcccttctgtctctcaatttatcattatggtctttctctca |
21548273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 779 - 816
Target Start/End: Complemental strand, 21547059 - 21547022
Alignment:
| Q |
779 |
acaacaattaccatggttgtttctgttctgttcatctc |
816 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
21547059 |
acaacaattaccatggttgtttctgttctgttcatctc |
21547022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 21547425 - 21547386
Alignment:
| Q |
320 |
cttttaccgtaatttttcttccgttgccatgccttttcca |
359 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
21547425 |
cttttaccgtaatttttctgtcgttgccatgccttttcca |
21547386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 52935362 - 52935437
Alignment:
| Q |
153 |
aaaattagggttcttggcctcccttcacaagcatcaagatggagctaaagattaactcttgacagcaaggtatatc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52935362 |
aaaattagggttcttggcctcccttcacaagcatcaagatggagttaaagattaactcttgacagcaaggtatatc |
52935437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 52942997 - 52943072
Alignment:
| Q |
153 |
aaaattagggttcttggcctcccttcacaagcatcaagatggagctaaagattaactcttgacagcaaggtatatc |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52942997 |
aaaattagggttcttggcctcccttcacaagcatcaagatggagttaaagattaactcttgacagcaaggtatatc |
52943072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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