View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_104 (Length: 233)
Name: NF1274_low_104
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_104 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 55634621 - 55634836
Alignment:
| Q |
4 |
acgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaatggttgctactgtctggtccgatgataacaaccaacaactggaagcaa |
103 |
Q |
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| T |
55634621 |
acgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaatggttgctacggtctggtccgatgataacaaccaacaactggaagcaa |
55634720 |
T |
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| Q |
104 |
ctactcaatttcggatgcttctttgcaattgtaactattgattttctttcatgtttttaatgcgttgctatcattctaactctaagtgttaaagatgttt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55634721 |
ctactcaatttcggatgcttctttgcaattgtaactattgattttctttcatgtttttaatgcgttgctgtcattctaactctaagtgttaaagatgttt |
55634820 |
T |
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| Q |
204 |
attgtgtatgtagatc |
219 |
Q |
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|||||||||||||||| |
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| T |
55634821 |
attgtgtatgtagatc |
55634836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 54862892 - 54862780
Alignment:
| Q |
54 |
aatggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttc |
153 |
Q |
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||||||||||| | |||||||||||||||||| |||||||| ||||||||||| ||||||||| || ||||| || |||||| |||||||| ||| |
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| T |
54862892 |
aatggttgctaatatctggtccgatgataacagtcaacaactcgaagcaactacggaatttcggaagcgtctttccatcggtaactgttgattttatttg |
54862793 |
T |
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| Q |
154 |
atgtttttaatgc |
166 |
Q |
| |
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| T |
54862792 |
atgtttttaatgc |
54862780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 54626474 - 54626587
Alignment:
| Q |
53 |
caatggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttcttt |
152 |
Q |
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||||||||||| | |||||||||||||||||| ||||||||| ||||||||||| ||||||||| || ||||| | | ||||| |||||||| ||| |
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| T |
54626474 |
caatggttgctgatatctggtccgatgataacagccaacaactcgaagcaactacggaatttcggaagcgtctttccgttggtaaccgttgattttattt |
54626573 |
T |
|
| Q |
153 |
catgtttttaatgc |
166 |
Q |
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||||||||||||| |
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| T |
54626574 |
gatgtttttaatgc |
54626587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 52987089 - 52986993
Alignment:
| Q |
67 |
gtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttcatgtttttaatgc |
166 |
Q |
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| T |
52987089 |
gtctggtcggatgataacatccaacaactggaagcaactaagcaaattcggaggcttcttt-caacagtaactgttgattttc--tcatgtttttaatgc |
52986993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 55660062 - 55659949
Alignment:
| Q |
53 |
caatggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttcttt |
152 |
Q |
| |
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|||| ||||||| |||||||| |||||||||| |||||| ||||||||||||| || ||||| | |||| | | || |||| |||||||||||||| |
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| T |
55660062 |
caatagttgctatggtctggtcggatgataacagccaacagttggaagcaactacccactttcgaaagcttatctccacaagtaattattgattttcttt |
55659963 |
T |
|
| Q |
153 |
catgtttttaatgc |
166 |
Q |
| |
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|||||||||||||| |
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| T |
55659962 |
catgtttttaatgc |
55659949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 16437591 - 16437806
Alignment:
| Q |
4 |
acgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaatggttgctactgtctggtccgatgataacaaccaacaactggaagcaa |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16437591 |
acgtgtctgatttgagttttgttttgtgatgttaggtttagagaatcttcaatggttgctacggtctggtccgatgataacaaccaacaactggaagcaa |
16437690 |
T |
|
| Q |
104 |
ctactcaatttcggatgcttctttgcaattgtaactattgattttctttcatgtttttaatgcgttgctatcattctaactctaagtgttaaagatgttt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16437691 |
ctactcaatttcggatgcttctttgcaattgtaactattgattttctttcatgtttttaatgcgttgctgtcattctaactctaagtgttaaagatgttt |
16437790 |
T |
|
| Q |
204 |
attgtgtatgtagatc |
219 |
Q |
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|||||||||||||||| |
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| T |
16437791 |
attgtgtatgtagatc |
16437806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 13400818 - 13400929
Alignment:
| Q |
53 |
caatggttgctactgtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttcttt |
152 |
Q |
| |
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||||||||||| ||| ||||| |||||||| || |||||||| ||||||||||| |||||||||| |||||||| || |||| | ||||||||| || |
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| T |
13400818 |
caatggttgctggtgtttggtcagatgataataatcaacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattgttgattttcatt |
13400917 |
T |
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| Q |
153 |
catgtttttaat |
164 |
Q |
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||||||||||| |
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| T |
13400918 |
gatgtttttaat |
13400929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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