View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_11 (Length: 663)
Name: NF1274_low_11
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 44 - 663
Target Start/End: Complemental strand, 39956105 - 39955500
Alignment:
| Q |
44 |
ttctaaagggaaaatgtccctgataattcagagtttgaccgtgaggtaagtaaagtccgtcaaagatagttcggatagattcaaactcccgataggaact |
143 |
Q |
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| T |
39956105 |
ttctaaagggaaaatgtccctgataattcagagtttgaccgtgaggtaagtaaagtccgtcaaagatagttcggatagattcaaactcccgataggaact |
39956006 |
T |
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| Q |
144 |
gcagagctgtgagatataaaacatgaggtgtttaaagcttggctctttatttttcagtgtatgttacnnnnnnnnagtatattataattgtatattcttt |
243 |
Q |
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| T |
39956005 |
gcagagctgtgagatataaaacatgaggtgtttaaagtttggctctttatttttcagtgtatgttacttttttt-agtatattataattgtatattcttt |
39955907 |
T |
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| Q |
244 |
tgatatctctctttatatggctttaaagtggggaatataccatagaagtttgcaatgcagtgacaacttcctatttatttataaagatcgttggctttag |
343 |
Q |
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| T |
39955906 |
tgatatctct--ttatatggctttaaagtggggaatataccatagaagttagcaatgcagtgacaacttcctatttatttataaagatcgttggctttag |
39955809 |
T |
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| Q |
344 |
caatcaattgaacaatgaatgctttcctctgtggcagaaaagaagcttttaatgactctgcttgttgtgcacttcacattaagatataggggaaattaaa |
443 |
Q |
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| T |
39955808 |
caatcaattgaacaatgaatgctttcctctgtggcagaaaagaagcttttaatgactctgcttgttgtgcacttcacattaagatataggggaaattaaa |
39955709 |
T |
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| Q |
444 |
ctttttaggcatgaaaaggagagatgggcacgttgggttgaatacagtattagacaattaaataaaattgtaacatttggaatattgttaagaatattaa |
543 |
Q |
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| T |
39955708 |
cttttgaggcatgaaaaggagagatgaatac---aggt--attagacaaataaataaataaataaaattgtaacatttggaatattgttaagaatattaa |
39955614 |
T |
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| Q |
544 |
ttagttctgtaataaagtacactaggattggaagacagaacatattttattgatttctaggctactatcataaggcactaacatattacatatgtatata |
643 |
Q |
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| T |
39955613 |
ttagttctgtaataaagtacactaggattgga------aacatattttattgatttctaggctactatcataaggcactaacatattacatatgtatata |
39955520 |
T |
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| Q |
644 |
tcatctttataatattgttt |
663 |
Q |
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| T |
39955519 |
tcatctttataatattgttt |
39955500 |
T |
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