View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_low_111 (Length: 221)

Name: NF1274_low_111
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_low_111
NF1274_low_111
[»] chr5 (2 HSPs)
chr5 (1-100)||(6314218-6314317)
chr5 (26-100)||(6329426-6329500)
[»] chr4 (1 HSPs)
chr4 (5-100)||(56537898-56537993)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6314317 - 6314218
Alignment:
Q  1 atttaacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacattcatatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6314317 atttaacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcataacttcatcagcaacattcatatc 6314218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 6329500 - 6329426
Alignment:
Q  26 tccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacattcatatc 100  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| ||||| | ||| |||||||||||||||||    
T  6329500 tccatccacaagcccattgattctatcacctatcatgcaaccaacactcataaattcttcagcaacattcatatc 6329426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 56537993 - 56537898
Alignment:
Q  5 aacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacattcatatc 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||||| ||||||    
T  56537993 aacttaccaagacccagaaactccgtccacaagccctttgattctatcacctgtgatgcaaccaactccaataacttcttcagcaacatccatatc 56537898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University