View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1274_low_117 (Length: 206)
Name: NF1274_low_117
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_117 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 42378327 - 42378451
Alignment:
| Q |
2 |
ctatcctagatcattagtttatagagtaacacccctcaccttacaagccagttttgtaagctctgcccaaattctaacatgaaatcacattcaaagattt |
101 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42378327 |
ctatcctagatcattagtatatagactgacacccctcaccttacaagccagttttgtaagctctgcccaaattctaacatgaaatcacattcaaagattt |
42378426 |
T |
|
| Q |
102 |
tgccaataatgtctaataaggaagg |
126 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42378427 |
tgccaataatgtctaataaggaagg |
42378451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 42407041 - 42407165
Alignment:
| Q |
2 |
ctatcctagatcattagtttatagagtaacacccctcaccttacaagccagttttgtaagctctgcccaaattctaacatgaaatcacattcaaagattt |
101 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42407041 |
ctatcctagatcattagtatatagactgacacccctcaccttacaagccagttttgtaagctctgcccaaattctaacatgaaatcacattcaaagattt |
42407140 |
T |
|
| Q |
102 |
tgccaataatgtctaataaggaagg |
126 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42407141 |
tgccaataatgtctaataaggaagg |
42407165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 50057088 - 50057118
Alignment:
| Q |
31 |
cacccctcaccttacaagccagttttgtaag |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
50057088 |
cacccctcaccttacaagccagttttgtaag |
50057118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University