View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_125 (Length: 202)
Name: NF1274_low_125
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_125 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 5178356 - 5178512
Alignment:
| Q |
24 |
gagtgagagacaaatattgctacaaaatgcacaacttttctaaggagaatagaatcaagctaataagattgtttgaccaaaaatatacacatataaaaga |
123 |
Q |
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| T |
5178356 |
gagtgagagacaaatattgctacaaaatgcacaacttttctaaggagaatagaatcaaggtaataagattgtttgaccaaaaatatacacatataaaaga |
5178455 |
T |
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| Q |
124 |
ggaaataatagttgctttaattcttaccttgctttccttttctagcttggccctctt |
180 |
Q |
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| T |
5178456 |
ggaaataatagttgctttaatttttaccttgctttccttttctagcttggccctctt |
5178512 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44156793 - 44156761
Alignment:
| Q |
1 |
aaataaaattccgagacctatttgagtgagaga |
33 |
Q |
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| T |
44156793 |
aaataaaattccgagacctatttgcgtgagaga |
44156761 |
T |
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