View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_13 (Length: 599)
Name: NF1274_low_13
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 29 - 589
Target Start/End: Complemental strand, 46230885 - 46230347
Alignment:
| Q |
29 |
aaagaattcaacatcttatcaatttcatcaataagagaggacaacgtttaatnnnnnnnnnnnnnnnnnnnntgctcataacatacggaggaataaattg |
128 |
Q |
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| T |
46230885 |
aaagaattcaacatcttatcaatttcatcactaagagaggacaacgtttaataaaaaaaaaaaa--------tgctcataacatacggaggaataaattg |
46230794 |
T |
|
| Q |
129 |
catcaccgatttgatgagaacttctcataccggcttgagataagcccttgctactcccaagattattttcttccagattccttaatgaatttaaaaatag |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
46230793 |
catcaccgatttgatgagaacttctcataccggcttgagataagcccttgctactccacaaattattttcttccagattccttaatgaatttaaaaatag |
46230694 |
T |
|
| Q |
229 |
atttcccacttcataaacggtaagtcgaggtactttcaagtacccaacacttgttgaactccacaagtattatcaatagagttgttgacagtttgttgca |
328 |
Q |
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| T |
46230693 |
atttcccacttcataaacggtaagtcgaggtactttcaagtacccaacacttgttgaactccacaagtattatcaat--------------tttgttgca |
46230608 |
T |
|
| Q |
329 |
cgttacggcggcaatatatcttatatttttgcaaatttatcgaccgacccaaaggtacttcatatacagataaattatttttcatgatcaaaacttcatt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46230607 |
cgttacggcggcaatatatcttatatttttgcaaatttatcgaccgacccaaaggtacttcatatacagataaattatttttcatgatcaaaacttcatt |
46230508 |
T |
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| Q |
429 |
tctagagctataaaggagcattcctacaaatttaagaatcttattatgacaaaaatttgcaagataatcaactcattgccaaagtttgacactctattag |
528 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46230507 |
tcttgagctataaaggagcattcctacaaatttaagaatcttattatgacaaaaatttgcaagataatcaactcattgccaaagtttgacactctattag |
46230408 |
T |
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| Q |
529 |
gagcaaaaataagtcgtaccgatcaataaagatctatggcctaccttgtgtcaaccctatg |
589 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46230407 |
gagcaaaaataagtcgaaccgatcaataaaggtctatggcctaccttgtgtcaaccctatg |
46230347 |
T |
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