View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_17 (Length: 531)
Name: NF1274_low_17
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 241 - 522
Target Start/End: Original strand, 18235247 - 18235523
Alignment:
| Q |
241 |
aaatcaaaggcgcgtgagaaagccaaatattttannnnnnnaggataattggctttctctttagcatggctacaaagtgtggtctccaaagtcctctaat |
340 |
Q |
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| T |
18235247 |
aaatcaaaggcacgtgagaaagccaattatttt----ttttaggataattggctttctcttcaggatggctacaaagtgtggtctccaaagccctctaat |
18235342 |
T |
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| Q |
341 |
gctgaactttctcaggtgtctcaaacttattcatcatgatcttggaatttggaatgcaccgttaataaatgcaaatttcttgccatttgaagttatgtaa |
440 |
Q |
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| T |
18235343 |
gctgaactttctcaggtgtctcaa-cttattcatcatgatcttggaatttggaatgcaccattgataaatgcaaatttcttgccttttgaagccatgtaa |
18235441 |
T |
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| Q |
441 |
atccttcaactcgctttgccaacaacaacacatatgaactctcactataacggaatattaggaatcatgaagacaactccct |
522 |
Q |
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| T |
18235442 |
atccttcaactccctttgccaacaacaacacatatggattctcactatatgggaatattaggaatcgtgaagacaactccct |
18235523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 18235081 - 18235136
Alignment:
| Q |
84 |
gttaagaatccatatgcaatgcaaaataaaataaacttctgatcaattctataaat |
139 |
Q |
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| T |
18235081 |
gttaagaatccatatgcaatacaaaataaaataaacttctgatcaattctataaat |
18235136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 364 - 464
Target Start/End: Original strand, 55445182 - 55445281
Alignment:
| Q |
364 |
aacttattcatcatgatcttggaatttggaatgcaccgttaataaatgcaaatttcttgccatttgaagttatgtaaatccttcaactcgctttgccaac |
463 |
Q |
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| T |
55445182 |
aacttattcatcatgatcttggaatttagaatgcacagttgataaatgcaaatttcttgcc-tttgaagccatgcaaatccttcaactccctttgccaac |
55445280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 424
Target Start/End: Original strand, 21112191 - 21112305
Alignment:
| Q |
306 |
atggctacaaagtgtggtctccaaagtcctctaatgctgaactttctcaggtgtctcaaacttattcatcatgatcttggaatttggaatgcaccgttaa |
405 |
Q |
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| T |
21112191 |
atggctacaaggtgtggtctccaaagccatccaatagtgaactttctcaagtgtctcaa----cttcatcatgatcttggagttgggaatgcatcgttga |
21112286 |
T |
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| Q |
406 |
taaatgcaaatttcttgcc |
424 |
Q |
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| T |
21112287 |
tcaatgcatatttcttgcc |
21112305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 473
Target Start/End: Complemental strand, 18682674 - 18682569
Alignment:
| Q |
368 |
tattcatcatgatcttggaatttggaatgcaccgttaataaatgcaaatttcttgccatttgaagttatgtaaatccttcaactcgctttgccaacaaca |
467 |
Q |
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|||| |||||||||||||| ||| ||||| || | |||||||| ||||||||||| ||| || ||| |||| ||||||||| |||| |||||| || |
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| T |
18682674 |
tatttatcatgatcttggagtttagaatgtacaatcaataaatgtgaatttcttgccttttcaaaccatgcaaatacttcaactccctttaccaacacca |
18682575 |
T |
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| Q |
468 |
acacat |
473 |
Q |
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|||||| |
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| T |
18682574 |
acacat |
18682569 |
T |
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